BAC Information

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BAC

Clone NameMSMg01-496F15
Chromosome4 (Build37)
Map Location 112,613,253 - 112,613,689
singlet/doubletsinglet
Overlap genenone
Upstream geneC130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
Downstream geneLOC433745, LOC545668, LOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496F15.T7 (MSMg01no496_f15.b1)MSMg01-496F15.TJ (MSMg01no496_f15.g1)
ACCAG573178AG573179
length782796
length of high quality
(start - end)		607 (68 - 674)520 (78 - 597)
definitionCHROMAT_FILE: MSMg01no496_f15.b1 PHD_FILE: MSMg01no496_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:39 2005CHROMAT_FILE: MSMg01no496_f15.g1 PHD_FILE: MSMg01no496_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXGTCAGCTTCAAGGACTATATAGGACATTGGAAC
ACCGGCAAAGGCTTAGCTATATGTCAAAATCAATCATTAAAGACATTTAT
AATAAAACAATACTAAAAGAGAGCACAGAGATCCATACACCAGACTAAAG
CGGGGTTTGAGTATATGGGCTATGGGAATGTCAAGGTTCCAGGAGGCTAT
GTTTCCATGAAACTCTTTGCCTCAGAACTGCTTCCAGGTTTCTAAACCTG
TCAAGCAGACTTCACTGGAGTGGATGTAGCATATGTGGATCCTGCACATC
AGAGTGCATCCATCACAGCCATGGAATATGAAGGGGCATTTTAACAAAAC
ATTCTTGCTTGCCATTACTGTTACTAGATGCCGTCTGAGATGAGGATAAC
TCAACTGTGTTATATTGATTAGAAAAAAGCACCCATAAAAACAATGATTA
GTGTGTATTTTTAAAGCTACCATATGGAACTAAAAATGAACAAAAAGTCA
CTGATAGAAGTCAAAAAGAAATTACAGCAAGTGTTCAATGCCATGAGAAA
AGTAACTTTATAGAAAGTCTCTGAGGGCAAGAAAGCCCTAAATCCTCATA
AACCACCTAGGTTATTTAAACTGTTGTCAAATATGCTAAAACACATGGTA
TGACCTTAAAACTAAAGACACTATACCTTTAGTCTACATTACATGAAAAA
AAAAAAAAAAGGATAGGATAGAGATGGAAACA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATTCCTAAACATGATA
AAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGGGAGA
AGCTGGAAGCAATCCCAATAAAATCAGGGACTAGAAAAGGCTGACTACTT
TCTCCCTACCTATTCAACATAGTACATGAAGTCCTAGTCAGACCAGTACG
ACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAATCAAAA
ATCACTATTTTCAGATGATATGATAGTATATATAAGTGACCCTAAAAATT
ACATCAGAGAACTCCTAAACCTGATAAACAGCTTCAGGGAAGTAGCTTGA
TTTAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAAGATAA
ACCGCCTGAGAAAGAACTTATTGAAACAACACCCTTCACAATAGTCACAA
ATAATATAAAATACCTTGGCATGACTCTAACTAAGAAAGAGAAAGATCTG
TATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATCAAAGAAGATCTCAG
AAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATAGTAA
AAATGGCTATCTTGCCAAAAGCAATCTACAGATTCATTGCAATACCCATA
AAAATCCNANNCTCATTCTTCACGAATTGGNAAGGGCATTTGAAAATTAA
TCTGGNNATACAGAAAATCTAGATAGCAAAAATATTCTCAAGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_f15.b1 MSMg01no496_f15.b1 CHROMAT_FILE:
MSMg01no496_f15.b1 PHD_FILE: MSMg01no496_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:39 2005
         (607 letters)



>mm_chr4_112612683_112613689
          Length = 1007

 Score =  538 bits (278), Expect = e-157
 Identities = 398/438 (90%), Gaps = 2/438 (0%)
 Strand = Plus / Minus

                                                                        
Query: 171  tccaggaggctatgtttccatgaaactctttgcctcagaactgcttccaggtttctaaac 230
            |||||||||||| |||||  |||||||||||||||||| |||||||||||||||||||||
Sbjct: 1007 tccaggaggctaagtttctgtgaaactctttgcctcaggactgcttccaggtttctaaac 948

                                                                        
Query: 231  ctgtcaagcagacttcactggagtggatgtagcatatgtggatcctgcacatcagagtgc 290
            ||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||
Sbjct: 947  ctgtcaagcagacttcattggagtggatgtagcatgtgtggaccctgcatatcagagtgc 888

                                                                        
Query: 291  atccatcacagccatggaatatgaaggggcattttaacaaaacattcttgcttgccatta 350
            |||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 887  atccgtcacagccatggaatatgaaggggcattttaactaaacatgcttgcttgccatta 828

                                                                        
Query: 351  ctgttactagatgccgtctgagatgaggataactcaactgtgttatattgattagaaaaa 410
            || ||| |||||||| || ||||||||||||||||| ||||| | ||||||| |||||||
Sbjct: 827  ctattattagatgccttcggagatgaggataactcatctgtggtgtattgataagaaaaa 768

                                                                        
Query: 411  agcacccataaaaacaatgattagtgtgtatttttaaagctaccatatggaactaaaaat 470
            ||||||||||||||||||| |||| ||||| |||  ||||||| |||||||| ||| |||
Sbjct: 767  agcacccataaaaacaatggttagggtgtactttgcaagctacaatatggaaataataat 708

                                                                        
Query: 471  gaacaaaaagtcac-tgatagaagtcaaaaagaaattacagcaagtgttcaatgccatga 529
             ||||||||||||| || || || |||||||||||||||||||| |||||||||||||||
Sbjct: 707  aaacaaaaagtcacttg-tacaattcaaaaagaaattacagcaaatgttcaatgccatga 649

                                                                        
Query: 530  gaaaagtaactttatagaaagtctctgagggcaagaaagccctaaatcctcataaaccac 589
            ||||| ||| ||||||||||| |||||| | |||||||| ||||| ||||||||||||||
Sbjct: 648  gaaaactaattttatagaaagcctctgaagtcaagaaagtcctaagtcctcataaaccac 589

                              
Query: 590  ctaggttatttaaactgt 607
            ||||||||||||||||||
Sbjct: 588  ctaggttatttaaactgt 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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