Query= MSMg01no496_g01.b1 MSMg01no496_g01.b1 CHROMAT_FILE:
MSMg01no496_g01.b1 PHD_FILE: MSMg01no496_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:41 2005
(226 letters)
>mm_chr4_58924143_58924768
Length = 626
Score = 354 bits (183), Expect = e-102
Identities = 215/226 (95%)
Strand = Plus / Plus
Query: 1 ggacatgcggggggnctgacggaacggacgggtggacattttccgacctgggggcgacag 60
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ggacatgcggggggtctgacggaacggacgggtggacacagtccgacctgggggcgacag 260
Query: 61 gccgcgcgccagctccggtagcaagccaggggcccgggatccccccaaagcccgggccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccgcgcgccagctccggtagcaagccaggggcccgggatccccccaaagcccgggccga 320
Query: 121 agctgatttcgagcaggggtagctaagcccggggctctggtttcaatttctttatttgac 180
||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 321 agcagatttcgagcaggggtagctaagcccggggctctggtttcaatttcacgacgtgac 380
Query: 181 attgcaaacctgcggtctacgagcgcccgcggcggcggcccgcgcc 226
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 attgcaaacctgcggcctacgagcgcccgcggcggcggcccgcgcc 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space: 133889
Effective search space used: 133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no496_g01.g1 MSMg01no496_g01.g1 CHROMAT_FILE:
MSMg01no496_g01.g1 PHD_FILE: MSMg01no496_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:41 2005
(664 letters)
>mm_chr4_59090270_59091332
Length = 1063
Score = 1149 bits (594), Expect = 0.0
Identities = 627/638 (98%), Gaps = 1/638 (0%)
Strand = Plus / Minus
Query: 27 ctagtattaagaaaaagagatgtggggctggagagatggctcagtggttaagagtgctag 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 ctagtattaagaaaaagagatgtggggctggagagatggctcagtggttaagagtgctag 1004
Query: 87 ccactcttccagagaacctgggttcaattcccagcacctatatggctgctcaaaacagta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 ccactcttccagagaacctgggttcaattcccagcacctatatggctgctcaaaacagta 944
Query: 147 actccagttgcaggggatctgacaccctcacacagacatacttacaggcaaaacaccaat 206
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 actccagttgcaggggatgtgacaccctcacacagacatacttacaggcaaaacaccaat 884
Query: 207 gcgcatgaaataaaaataaataatttttaaaaaagaatatgtgtatttttttatttaaaa 266
|| ||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||
Sbjct: 883 gcacatgaaataaaaataaataattttttaaaaagaaaacgtgta-ttttttatttaaaa 825
Query: 267 caaaagagaagcctcaagtatcttgtgttctaacatttctccttaccaaaaggcttggga 326
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 824 caaaagagaagcctcaaatatcttgtgttctaacatttctccttacaaaaaggcttggga 765
Query: 327 agaatttagggctaaataaatgctgcctcaaacaggcaagataaaacataaatcattgca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 agaatttagggctaaataaatgctgcctcaaacaggcaagataaaacataaatcattgca 705
Query: 387 taaaatcgtctcccaagtctatctgctttctgaaccaactgggagatgaaagcaggagtc 446
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 taaaaacatctcccaagtctatctgctttctgaaccaactgggagatgaaagcaggagtc 645
Query: 447 tcatttaagaaggcctgtcctgttctgcattatatagccgtcatcagaagcaattcattt 506
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 644 tcatttaagaaggcctgtcctgttctgcattatatagccatcatcagaagcaattcattt 585
Query: 507 ggggatcaaatagactgacagaaaggacaagcagggaattaccactgtcagcagctcaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggggatcaaatagactgacagaaaggacaagcagggaattaccactgtcagcagctcaaa 525
Query: 567 gccaggactgcttcccagtgctggcactgatattgggtctagtcagtgctctgtctatta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gccaggactgcttcccagtgctggcactgatattgggtctagtcagtgctctgtctatta 465
Query: 627 ttcttctctcctctgccagctactgtgcatcatgacta 664
||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttcttctctcctctgccagctactgtgcatcatgacta 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
