BAC Information

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BAC

Clone NameMSMg01-496K13
Chromosome4 (Build37)
Map Location 58,960,418 - 58,960,918
singlet/doubletsinglet
Overlap geneLOC100041581
Upstream geneTxn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180
Downstream geneLtb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496K13.T7 (MSMg01no496_k13.b1)MSMg01-496K13.TJ (MSMg01no496_k13.g1)
ACCAG573412AG573413
length1,288758
length of high quality
(start - end)
---496 (72 - 567)
definitionCHROMAT_FILE: MSMg01no496_k13.b1 PHD_FILE: MSMg01no496_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:04 2005CHROMAT_FILE: MSMg01no496_k13.g1 PHD_FILE: MSMg01no496_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGCGCCGATAAAAGATAGAGAATTTGNTGGGAGTGGGTANGGAGGTTTT
CTCTCCAAAAAGGAGAAGGCGCGGGAATCTACCTAACCGTCTACCCCTCA
CACAGATCACCACCGAATAATCAGACGCATAAACAACACACAAAAGACCT
CGCCGTGGTAGCCCGCGCCTTTTCTCTACTTTACGCCGATACCGCAGTGA
TTAATCGCGCGTAGCCACACTNTGCTCGTCCCCACGTTATGTATATTTAT
ATTTATACACGATAACGCATCCTTCACCTATGATTACCTGAGGGCGAAGA
AGCCTCACACGACGCGCGCACCCGACCACAACTCAGCGCACGAGCTCTTA
TATGGCAGCACTGATATGCCGATACTCAGCGGAGGGTGCGTCACGCATAC
AACAATACCACAACAACAACACATAAAACTCGCGAATGCGAAATAACACC
CAACGAGCGTATAGAGGAAGTTAGGCTATATTTATACAACTCTAGGATCT
CTACCCTTTTAGCCGGAGTANAAGCGAGATACACCGCGCGGGGCGCGCGG
CGCGCGAGTGATAGTAATAGAAAGACAAAAACTATAACCAGTTAAAGCAC
AGTGATGTGATGCTCTAAACTAGTCGATTAGTGTACGTGAAACGAAATAC
ANGGATGCCGAACGATCCACCACTAGTAGCCGCGGCCCGCGACAATTTAA
CAAAAAACTAAAACAGCGTTAGTAGACGACACAGCTCAAGATTATTGTAT
CGCTACACTCTAGTAGAGAATAGGAGAGTATCACGTACGTCGGCCAAGAA
ACAGCACGACACATGACGGCCTGTCACTCTATATATAGGCACAACACGGT
TGATCACTGGTTACCTGCGGCGGCGCCAATCTCTTTCTTACGCAAACAAT
GGATATGGCTAAAAACCGGACAATCTTCATATAATACAATAGGACCACGT
ATAGGTAGATGGCGGCCCGACGCCGAAAGCACATGAGAGAACGATCGGCG
GCTCCTTTAATCTACTCCACCTCTTAGGAATAACATATAACACGCCCCAC
ATATTATTTAACTGATCCCACGCACGCCCGCGCGCAACTCTCATTAATCT
ATCNCCACCGGGCGAGAAGATAAAACGCAATGGCCAGTCATATAGATCAG
TCAAGACGTGGAGTCAACATAGTCACGGGCGCAGCGTTCGTCGTACGGGT
CCGACATCGCAGCAACTTATTAATTTATATCACGAGCGCCCTATCTTTGA
TCAACGTGAGCGCGCATACGTCGTCTATATGGACATAC
TTCGATGATGTGGGAGGCCGGGGGNCGCCTGGTTCAAAATTTGGGTGAAC
TATAGAAGGTACGCAAAATTCCTTCCTTTGAATATCTTTAGCTATATAGC
ACTCTGTACAATATAGTTTAGGAAAAAAAATTGGGGGGGGGGTTTCGAGA
CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATC
AGGCTGGCCTCGAACTCAGAAATCCACCTGCTTCTGCCTCCCGAGTGCTG
GGATTAAAGGCGTGCACCACCATACCCGGCTAATATTTTTAATTTATAAG
ATCTACCAAGGTATTCCTGCTTTGCTCAAATATTATTTATAGCTGTTGAC
TGAATACTATGCTAACCCCCCCCCCAAAAAAAAACAAAAAACAAAAAAAC
AAATGTGCCTCTGGGATTTCTAGCTGATTTCTACAGATAATAGCTAAGAA
GCAAGAGGACTTCAGGGGCTGGAGAGATGGCTCTGTAGTTAAGAGCACTG
ACTGCTCTTCCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGC
TCACAACCATCCATAAGGAGATCTGATGTCCTTCTTCTAGGGTGTCTGAG
GACAGCTCCAGTGTACTTACCTATAATAAATAAATAAAACTTTTCTTTAT
AAGAGAGTGAGATAGAGAGATATATAGAGAGACAGAGAGAGAGAGAGACA
CAGATAAATTCTACGTGTGTTTTGAGGGTAAACAGTTAAAGGTGATGTCT
TTTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_k13.g1 MSMg01no496_k13.g1 CHROMAT_FILE:
MSMg01no496_k13.g1 PHD_FILE: MSMg01no496_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:04 2005
         (496 letters)



>mm_chr4_58960111_58961002
          Length = 892

 Score =  822 bits (425), Expect = 0.0
 Identities = 480/505 (95%), Gaps = 13/505 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcctttga-atatctttagctatatagcactctgtacaatatagtttaggaaaaaaaa 59
           |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| 
Sbjct: 808 cttcctttgatatatctttagctatatagcactctgtataatagagtttaggaaaaaaat 749

                                                                       
Query: 60  tt--------ggggggggggtttcgagacagggtttctctgtatagccctggctgtcctg 111
           ||        ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tttttttttgggggggggggtttcgagacagggtttctctgtatagccctggctgtcctg 689

                                                                       
Query: 112 gaactcactttgtagatcaggctggcctcgaactcagaaatccacctgcttctgcctccc 171
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 688 gaactcactttgtagatcaggctggccttgaacttagaaatccacctgcttctgcctccc 629

                                                                       
Query: 172 gagtgctgggattaaaggcgtgcaccaccatacccggctaatatttttaatttataagat 231
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 628 gagtgctgggattaaaggcgtgcaccaccacacccggctaatatttttaatttataagat 569

                                                                       
Query: 232 ctaccaaggtattcctgctttgctcaaatattatttatagctgttgactgaatactatgc 291
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 568 ctaccaaggtaaaccagctttgctcaaatattatttatagctgttgactgaatactatga 509

                                                                       
Query: 292 taaccccccccccaaaaaaaaacaaaaaacaaaaaaacaaatgtgcctctgggatttcta 351
           |||||||||||    ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 508 taacccccccc----aaaaaaacaaaaaacaaaaaaacaaatgtgcctctgggattgcta 453

                                                                       
Query: 352 gctgatttctacagataatagctaagaagcaagaggacttcaggggctggagagatggct 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gctgatttctacagataatagctaagaagcaagaggacttcaggggctggagagatggct 393

                                                                       
Query: 412 ctgtagttaagagcactgactgctcttccagagatcctgagttcaattcccagcaaccac 471
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgaagttaagagcactgactgctcttccagagatcctgagttcaattcccagcaaccac 333

                                    
Query: 472 atggtggctcacaaccatccataag 496
           |||||||||||||||||||||||||
Sbjct: 332 atggtggctcacaaccatccataag 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 892
Length adjustment: 10
Effective length of query: 486
Effective length of database: 882
Effective search space:   428652
Effective search space used:   428652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)