BAC Information

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BAC

Clone NameMSMg01-497I05
Chromosome4 (Build37)
Map Location 106,630,842 - 106,831,291
singlet/doubletdoublet
Overlap geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11
Downstream geneTmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497I05.T7 (MSMg01no497_i05.b1)MSMg01-497I05.TJ (MSMg01no497_i05.g1)
ACCAG574063AG574064
length746750
length of high quality
(start - end)		415 (327 - 741)643 (80 - 722)
definitionCHROMAT_FILE: MSMg01no497_i05.b1 PHD_FILE: MSMg01no497_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:14 2005CHROMAT_FILE: MSMg01no497_i05.g1 PHD_FILE: MSMg01no497_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,630,842 - 106,631,255)(106,830,652 - 106,831,291)
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATG
CGCGGAATTCACTTTTGTTACTAAAAAGGCCTTGAACTCAGAAATCCACC
TGCCTCTGCCTCCCAAGTGCTGGGATGAAAGGCATACCTTGTCACTGCCT
GGCTATCTTGGCACCTCTTACATTTGTGTTGGTCACAGCATTAAGGACAG
TGCTGTTAATGGAGGTCTCATATGGTCAGGAAACTGGGTGAGAACTGGAC
CCATAAGAGACCAGCCACCATACTGTCTTCATCATGAGACTTGAGATAGA
ATGGAGGTGAGGCTAAGGTAGGTAATTTTTTGAGAAGAGATAGAACCTGA
CAGGAAGTGAGGTGATCCAGAGAGACTGTGTCTGACAGGAAGTGAGGTGA
CTCAGGGGAGACCATGTCTGACAGGAAGTGAGGTGACCCAGGGAAGACAT
TGTCTGACAGGAAGTGAGGTGACCCAGGGAGACCGTGTCTGACAAAGGTT
CTGCACAGATAGTTTGTGGAGAAGCGTGGCTCTGTTCTAGTGTCATTTGG
AGAAGCCATCTCCTCTCTAGGTGGGGCAGTCTGGCCCCTCTGGCCAGCTA
GTTTCTCTGTAGAAGTGGAACTGTATCCCATCCTGCACATCCTCGGTGTT
ATGTGCTAGCTCTGCCATGATGGTGTTTGCTCCTTTGTGTGCTCTGAGTT
CTGCCTAGCCCAGGGCTGTGCAGACTAAGGTGCCTCATGGGAAAGN

NNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGTTAAAGGAAGGACTT
GAACCTGGAAGGAAATTCATTGTTAGAAAGTGGGAAGAAGGGCAGCTGTG
GAGAGGCCAAGAGACTGTGGGAGCAGGAGAAAAGCAGGCCGGGAAGTGCC
ACATGGACCAGGGACAAGTGTCTTCAGAGACACTGGAAATGAGTGGTCCC
GATCCTCTAACGTGGTCAGGGAAGCTGAAAAGACGTTGAGCCTTGCAGTT
ATTGGGCCTCTGTGAGTGGATTTTTTATTATTTGAAGAGTGAGCAGTGGG
CAAGGGGCATCGAGCAAACCAAAGATGAGGGAGGCAAGGAGGAAGGCTGG
CAGGCAGGTGGGCGGGCCCACCTGCAGGCCTACACGTGAGAGAGAGTCCA
GGGAAATGGGTCTGTCTGTTCTAGTGACCTGATTTCAGAGGTGCCTTGCT
ACTTTAACTCATGATTGGCTAACTGCAGTAAATAGCTACTTATATTTATA
AAGTGCTGTCACATCCATGACACTTTTGACCCATGTAACAGTCCTGTAAA
GTCATTATAATTATTTTCTCCATTTTGAAAATGGGAAAATTGAAGCTTCA
GGAATTTAAAGTAACTTGCTCCGAGTCAGACAGGCAAATGATGAGCAACA
GTACTGAGACATTCCTTACTGCGTTCTCCACTTCCGACACCTGAAGGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_i05.b1 MSMg01no497_i05.b1 CHROMAT_FILE:
MSMg01no497_i05.b1 PHD_FILE: MSMg01no497_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:14 2005
         (415 letters)



>mm_chr4_106630641_106631455
          Length = 815

 Score =  793 bits (410), Expect = 0.0
 Identities = 413/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttttgagaagagatagaacctgacaggaagtgaggtgatccagagagactgtgtctgaca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttttgagaagagatagaacctgacaggaagtgaggtgatccagagagactgtgtctgaca 261

                                                                       
Query: 62  ggaagtgaggtgactcaggggagaccatgtctgacaggaagtgaggtgacccagggaaga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggaagtgaggtgactcaggggagaccatgtctgacaggaagtgaggtgacccagggaaga 321

                                                                       
Query: 122 cattgtctgacaggaagtgaggtgacccagggagaccgtgtctgacaaaggttctgcaca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cattgtctgacaggaagtgaggtgacccagggagaccgtgtctgacaaaggttctgcaca 381

                                                                       
Query: 182 gatagtttgtggagaagcgtggctctgttctagtgtcatttggagaagccatctcctctc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gatagtttgtggagaagcgtggctctgttctagtgtcatttggagaagccatctcctctc 441

                                                                       
Query: 242 taggtggggcagtctggcccctctggccagctagtttctctgtagaagtggaactgtatc 301
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taggtgaggcagtctggcccctctggccagctagtttctctgtagaagtggaactgtatc 501

                                                                       
Query: 302 ccatcctgcacatcctcggtgttatgtgctagctctgccatgatggtgtttgctcctttg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccatcctgcacatcctcggtgttatgtgctagctctgccatgatggtgtttgctcctttg 561

                                                                 
Query: 362 tgtgctctgagttctgcctagcccagggctgtgcagactaaggtgcctcatggg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtgctctgagttctgcctagcccagggctgtgcagactaaggtgcctcatggg 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_i05.g1 MSMg01no497_i05.g1 CHROMAT_FILE:
MSMg01no497_i05.g1 PHD_FILE: MSMg01no497_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:14 2005
         (643 letters)



>mm_chr4_106830286_106831328
          Length = 1043

 Score = 1191 bits (616), Expect = 0.0
 Identities = 634/640 (99%)
 Strand = Plus / Minus

                                                                        
Query: 4    gagttaaaggaaggacttgaacctggaaggaaattcattgttagaaagtgggaagaaggg 63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gagttaaaggaaggacttgaacctggaaggaaattcattgttagaaagtgggaagaaggg 947

                                                                        
Query: 64   cagctgtggagaggccaagagactgtgggagcaggagaaaagcaggccgggaagtgccac 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  cagctgtggagaggccaagagactgtgggagcaggagaaaagcaggccgggaagtgccac 887

                                                                        
Query: 124  atggaccagggacaagtgtcttcagagacactggaaatgagtggtcccgatcctctaacg 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  atggaccagggacaagtgtcttcagagacactggaaatgagtggtcccgatcctctaacg 827

                                                                        
Query: 184  tggtcagggaagctgaaaagacgttgagccttgcagttattgggcctctgtgagtggatt 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  tggtcagggaagctgaaaagacgttgagccttgcagttattgggcctctgtgagtggatt 767

                                                                        
Query: 244  ttttattatttgaagagtgagcagtgggcaaggggcatcgagcaaaccaaagatgaggga 303
             || || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  cttcatcatttgaagagtgagcagtgggcaaggggcatcgagcaaaccaaagatgaggga 707

                                                                        
Query: 304  ggcaaggaggaaggctggcaggcaggtgggcgggcccacctgcaggcctacacgtgagag 363
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 706  ggcaaggaggaaggctggcaggcaggtgggcaggcccacctgcaggcctacacgtgagag 647

                                                                        
Query: 364  agagtccagggaaatgggtctgtctgttctagtgacctgatttcagaggtgccttgctac 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 646  agagtccagggaaatgggtctgtctgttctagtgacctgatttcagaggtgcctcgctac 587

                                                                        
Query: 424  tttaactcatgattggctaactgcagtaaatagctacttatatttataaagtgctgtcac 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  tttaactcatgattggctaactgcagtaaatagctacttatatttataaagtgctgtcac 527

                                                                        
Query: 484  atccatgacacttttgacccatgtaacagtcctgtaaagtcattataattattttctcca 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526  atccatgacacttttgacccatgtaacagtcctgtaaagtcattataattattttctcca 467

                                                                        
Query: 544  ttttgaaaatgggaaaattgaagcttcaggaatttaaagtaacttgctccgagtcagaca 603
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 466  ttttgaaaatgggaaaattgaagcttcaggaatttaaagtaacttgctctgagtcagaca 407

                                                    
Query: 604  ggcaaatgatgagcaacagtactgagacattccttactgc 643
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 406  ggcaaatgatgagcaacagtactgagacattccttactgc 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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