BAC Information

Click to search

BAC

Clone NameMSMg01-497P03
Chromosome4 (Build37)
Map Location 90,363,024 - 90,363,246
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp352, LOC619842, LOC435792
Downstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497P03.T7 (MSMg01no497_p03.b1)MSMg01-497P03.TJ (MSMg01no497_p03.g1)
ACCAG574391AG574392
length764762
length of high quality
(start - end)
665 (76 - 740)223 (428 - 650)
definitionCHROMAT_FILE: MSMg01no497_p03.b1 PHD_FILE: MSMg01no497_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:48 2005CHROMAT_FILE: MSMg01no497_p03.g1 PHD_FILE: MSMg01no497_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAGAGAGCGCG
GAATTCTCACCATTGCAATAAAGAATGGCTGAGAAGCTCCTGAAAAAAAG
TTTAGCATCCTTAATCATCAGGGAAATGCAAATCAAAGCAACCCTGAGAT
TCCATGTCACAACAGGAAGAATGGCTAAGATCAAAAACTCAGGTGACAGC
AGATGCTGGCAAGGATGTCGAGAAAGAGGAACACTCCTCCATTGTTGCTG
GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCA
GAAAATTGGACATAGTACTATTTTATAATCCTGCAATACCTCTCCTGGGC
ATATATCCAGAAGAAGTTCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCTCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTTAAAAGAATGAAATTATGAAATTCCTAGGCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTATCCCAATCACAAA
AGAACTCACATGATATGTACTCACTGATAAGTGGATATTAGTCCAGAAAC
TTAGAATACCCAAGATACAAGATACAATCTGAAAAACACATGAAACTCAT
GAAGAATGAAGACTAAAATGTAGACACTTTGCCCCTTCTTGAATTGGGAA
CAAAACACCCATGG
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAAGGGGGNG
ACACTATAGAAGTTTCTAAACAAGCAACCCCTTAATATATTTCTCCATAA
TTCTCACACCAAAAACGTATTAATTATTTATCAGTACGCTGCACTACCTT
CCCCCAAATACAGGACGTTCAAGCCAGAGAGAGGTCAGAAATCATTTTCA
ATACATGCATCTCTCATTTAATAAAGTGTTAATTTACTAGACATATTTTA
AGCTAGTAAATATTTTAAAATGACTAACCGGCTAAGACTACAGCAGAAAT
GAAAATAATTTCTCCTATTATTATAAATGTTTGTACCTGAAAATTAAATG
TTCTATTTGTTGAATAGTTATAAGAACCAGGGCTGGGCATAGCTACTGCA
TTGAGCATTCTGTTCAGCCACACCTGCTTTGTCCAAGCCAGTACACCCTG
GGCTGGGGGCATATAGATTTTCTTAAACACAATCCAGACTTCCATTTTGA
TTTATACCTCCTGAGTGAATCGACCCACCAGAGCTATTATATATCTTCCT
TTTTCCATTTCCTTCCGTCAAGGCCTTTGGTTAGTGGGTGAAAGAAGATG
AGAATCCGCCAGCCGTGCCATTGAGGGATAGGAAGGCCTTGGATGGCCTC
CAGCCTAGTTTTCTCACCTTCTGATTTTGTTTTGACTTTTTAGCCTGCTA
AAGTCTCATAAGAGCATAAAATGTTCTGAAAGAGACTAGAAATTTCACAC
CAACTTTATGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_p03.g1 MSMg01no497_p03.g1 CHROMAT_FILE:
MSMg01no497_p03.g1 PHD_FILE: MSMg01no497_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:48 2005
         (223 letters)



>mm_chr4_90362824_90363446
          Length = 623

 Score =  424 bits (219), Expect = e-123
 Identities = 222/223 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtccaagccagtacaccctgggctgggggcatatagattttcttaaacacaatccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tttgtccaagccagtacaccctgggctgggggcatatagattttcttaaacacaatccag 364

                                                                       
Query: 61  acttccattttgatttatacctcctgagtgaatcgacccaccagagctattatatatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 acttccattttgatttatacctcctgagtgaatcgacccaccagagctattatatatctt 304

                                                                       
Query: 121 cctttttccatttccttccgtcaaggcctttggttagtgggtgaaagaagatgagaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cctttttccatttccttccgtcaaggcctttggttagtgggtgaaagaagatgagaatcc 244

                                                      
Query: 181 gccagccgtgccattgagggataggaaggccttggatggcctc 223
           |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 243 gccagccgtgccattgcgggataggaaggccttggatggcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)