BAC Information

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BAC

Clone NameMSMg01-497P07
Chromosome4 (Build37)
Map Location 110,984,166 - 110,984,480
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040381
Downstream gene2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497P07.T7 (MSMg01no497_p07.b1)MSMg01-497P07.TJ (MSMg01no497_p07.g1)
ACCAG574399AG574400
length1,501736
length of high quality
(start - end)
---315 (327 - 641)
definitionCHROMAT_FILE: MSMg01no497_p07.b1 PHD_FILE: MSMg01no497_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:49 2005CHROMAT_FILE: MSMg01no497_p07.g1 PHD_FILE: MSMg01no497_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGCCACACGAACTTTTGGGCGGGCGCGGCGCGGTGAGTATAAAGGGGCG
CTTTTTTCCTCTTCCAGGGAGGGAGGGGGGTAGATTGCGGGTTTTTTTCT
CCCCTGAGTCATAGCAGAGCCGCGCGGCGAGGCACAGGACATCTCGCACA
CCCTTTCACCCCCCACCCCTACATGGAGTACCACTTTTTAATTACAGGCA
ATAGACCTACGAATGAGTGCAGAGCGTATATTAGGTTTGTGAGCATACCA
TACTCATAAGATCGAACAGTGATGTGAAGCCCTGGTCAGTGGCGCTGAGC
AGAACATCTAAGATATACGACGCGCCCAGGCCCCGTGTTGCTCGTTTTTG
GCGGCGTAGAGACCGGCTTAGTTTGCCTGTTTCTCTTGTGGTTTGCCTAC
CCGCCTGCCCGTGTGCGCTGTGATTTACTCCACGTGTAGCTAGCCCTCTC
TTTTCTCGCCGGTCACTCGACGCCCCAATGCTCCCGTCTATTCGCAGAAN
ATTTGATTTCATGTCTAGTGTGGCCAGTTTACACATCACTTAGGTCTGCC
CCGGCCTCACATCACTCCCTATTTCGATATTTACGAGGCGCGCGATGCAT
GATTATTGATCTGTGTGCATGCGCTCATGCTACCTAGTTCACTCTTTTGT
ACCCAATAATCACCCTCTCACCTCTTCCACGTTCACATGATGTTTATCTG
ATGTTGTATGACGCCCACGTTTATTTATATTAATGNCGACTCGCTCTATC
TCTGTGTTCCCCCGTACTCTCTACCCGGTATAATAACTGTATTTCAGCTC
TCTCGCCGTATCAGTGCAAGTGCCGCGTATTATATAGACCATGACTCGAC
TGCGTCGGCGCCACCGCGAGCTACTCCATTATGTTGAAGCTGTCGCCTCG
GACGGCGTGGAATGTGATACCGCCTCACTCGTCTGGTAATCTCATCGCCA
GCACTGTATACGACATGTCTATGTATATACTTATAACTTATAACGCGAAN
CACGCGCATACGCACGTCNATGCTATCGAATACGATAGTGTAATANTATG
AGCACTCTCACCGCGTCGCCNATGCTGGCGCGCTGCGCTATACNTACTCT
CCATACGGTCTCTCTCGATAATACCTGCTCACGTGCACAGAGTGGCGCTG
TAGACGCATACACGAGCGTCGGTACTCCGAGACTCGCGACGATGAGACAC
TTGTGTCAATCGCGTCTATGCGACATATATGATGCTCGGATCACTCCTGC
CGCACTCTGCTCGTATTGATATGGTGCTCGATCTGCGCGCAACCGTCTGT
CTGNCCTTGGTCTGCCGGGCCGACTGCTGCGNTNGTGACGACTGACCTGC
ACNTCACGCAGACGACNCACATATGGCAGATATGTACCTACTATCGCACT
ATATCTCTGCGACATGTATACGACGCCTCGATCCCCACGCAGGCGAAGNG
CAGTACGTCGTCTAAACCCCACTCATCGCAACGAGTCGCGCGCACACTGC
C
NNNCCTCGATGCAGTGGGAGGTCTGGNGGNTGCCTGGTCCATATCTTGGG
GGTGAACTATAGAAGTACTAAAAAAGAGCCTATTTTGACTATGGTGTAGA
ATGCTGCACTTAACACATGAGAGCAGACAGCTCTTTGATATATACTAATA
TAATCCCCTTTGGATACACACCTAGACAGAGGATCATGTATTTTAAGTGA
CTCAGAGTCATCTGTTGTTTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTT
TTCTTCAGTTACTCTAACAAGGAGTTTGTCTACTTTGTTTTCCTGGGAAA
TCAATTTCATTGATCCCNNATANNTGTGTTTTAGTATCTATTTCATTTAC
CCATGCTTTAATCTTTATTTTTTTTATTTAGCAATTTTGGTTTTGGAGCT
GAAGATGCATCTCAGTGGAACACCTCTTACCTATCATGTGCAAGGCTCTA
GGTTTGATCCCTATAATTGCAAAGCCAGGGGAATTGCTTCCTTCCTGGGT
TTTAGAGTTCCTTAGGTAGCACTGGTAGCCTGGTTATTTAGTTCTTTCTT
TTTTGCCCATGAAGGTTCTGATTAGTTGAAACCCCATTGATAGTGCTTTT
GTTTTAATGTGCTGTATTTCCACTTTCACTTATTTCAGAAAATGCTTTTA
TTTCCTTCTAAATTTCTTCCTTGACCATTTAGGAGAATGTTATTTGGTCT
GAGTGTATTTGTATAAATTTCAAGGTTCTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_p07.g1 MSMg01no497_p07.g1 CHROMAT_FILE:
MSMg01no497_p07.g1 PHD_FILE: MSMg01no497_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:49 2005
         (315 letters)



>mm_chr4_110983819_110984533
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttttagtatctatttcatttacccatgctttaatctttattttttttatttagcaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgttttagtatctatttcatttacccatgctttaatctttattttttttatttagcaatt 603

                                                                       
Query: 61  ttggttttggagctgaagatgcatctcagtggaacacctcttacctatcatgtgcaaggc 120
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 602 ttggttttggagctgaagatgcatctcagtggaagatctcttacctatcatgtgcaaggc 543

                                                                       
Query: 121 tctaggtttgatccctataattgcaaagccaggggaattgcttccttcctgggttttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tctaggtttgatccctataattgcaaagccaggggaattgcttccttcctgggttttaga 483

                                                                       
Query: 181 gttccttaggtagcactggtagcctggttatttagttctttcttttttgcccatgaaggt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 attccttaggtagcactggtagcctggttatttagttctttcttttttgcccatgaaggt 423

                                                                       
Query: 241 tctgattagttgaaaccccattgatagtgcttttgttttaatgtgctgtatttccacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctgattagttgaaaccccattgatagtgcttttgttttaatgtgctgtatttccacttt 363

                          
Query: 301 cacttatttcagaaa 315
           |||||||||||||||
Sbjct: 362 cacttatttcagaaa 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)