NAAAATTATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGTTTAGCTCTGTGTCTCATTTTTAGTAAGTCTTTGCA
GTCTAACTTCTTGAGTTCTTTGTATATATTAGATATTAGCTCTCTATTAG
ATGTAGGGTTAATAAAGATCGTTTCCCAATCTGTGGGTTGCTATTTTGTT
CTATTGATAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTC
CCATTTGTCCATTGTTAATCTTAGAGCATAAGCCATTGGTGTTCTGCTCA
GGAAATTTTCCCCTGTGCCTGTGTGTTTAAGGCTTTTCCCTACTTTCTCT
TCTATTAGATTTAGTGTGTCTGGTTTTATGTGGAGATCCTTGATCAACTT
GGACTTGGGCTTTGTACAAGGAGATAAGAATGTATCAATTTGCATTTTTC
TACATGGAGACCACCAGTTGAACCAACACCATTTGTTGAAAATGCTGTCT
TTTTTCCACTGGATGGTTATAGCACCGTTGTCCAAGATCAAGTGACCATA
CGTATGTGGTTTCATTTGTGGGCCTTCAATTCTATTCCATTGACCTACCT
GTCTCTATACCAATACCATGCAGTTTTTAATCACTATTGGTCTATAGTGC
AGCTTGAGGTCAGGTGGTGATTTTCCCAGAAATTCTTAAATTGCTGAGAA
TAGATTTCACTATCCTGTGGCTATTGTTATTCTAAATGAATTTGAAGATT
GCTCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTCAAAGCTTGCAGGATGATTTCAGTAATCCATGTCAAGA
TCTGGGTCAGAAGTCTGTTCCAGCCTCTAGATCTAAGTCACAGCTGTGCC
CTCCATCTCTGGATTGTAGTACATCCCAGATGTAGTCAGCTTGACCACCA
GGAAGAGCCATGCCTAAACACCAGGGATGCCCAAGTCATCTCTTAGGTTT
AGATTATGTGATATGAAATGATTCTTAGCTTGAGAGTGAAGATATCAGAG
CTGCTTTTGCTCTCTTCTGGATTACTGCAATAGGGAAGTAATTCCTGTCT
TGAAATCTGTCTCTTTACCTTTTTATGTTTTTAGAAATGTTAATAATTTA
CTGCATATAAAAATTCTGAAGCGATTTAATTTTTTTCTCACCTGACAATT
TAAAAAGCCCTTTGATAAGAAGAAAAGAAAAGATTTTGCAGCTAAAAACT
GTGTTTGTCGAGCATTTGTATATTCTGACCCCTGAAATACAATCAATTTC
ATGATATTTAACATCAAGGAACACTTTCCAAAGAAATTCCTCATGACAAT
GGCCAATTTATGTGGCCTAAATATGTTCTGTATGTCTATTGCCCTACGCT
CAGAAGAACATGTTGACATAGAAATGGATCTAAATAGGCACAAAGAAGAC
ATATATCAGCCAATGAGAGAATT

Query= MSMg01no498_d17.g1 MSMg01no498_d17.g1 CHROMAT_FILE:
MSMg01no498_d17.g1 PHD_FILE: MSMg01no498_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:10 2005
         (584 letters)



>mm_chr4_8089483_8090466
          Length = 984

 Score =  969 bits (501), Expect = 0.0
 Identities = 561/581 (96%), Gaps = 2/581 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcaaagcttgcaggatgatttcagtaatccatgtcaagatctgggtcagaagtctgtt 60
           |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 932 tctcaaagtttgcaggatgatttcagtaatccatgtcaagatctggatcagaagtctgtt 873

                                                                       
Query: 61  ccagcctctagatctaagtcacagctgtgccctccatctctggattgtagtacatcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 872 ccagcctctagatctaagtcacagctgtgccctccatctctggattgtagtacattccac 813

                                                                       
Query: 121 atgtagtcagcttgaccaccaggaagagccatgcctaaacaccagggatgcccaagtcat 180
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 812 atgtagtcagtttgaccaccaggaagagccatgcctaaacaccagggatgcccaagccat 753

                                                                       
Query: 181 ctcttaggtttagattatgtgatatgaaatgattcttagcttgagag-tgaagatatcag 239
           |||||||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 752 ctcttaggttcagattatgtgatatgaaatgattcttagcttgagagct-aggatatcag 694

                                                                       
Query: 240 agctgcttttgctctcttctggattactgcaatagggaagtaattcctgtcttgaaatct 299
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 agctgcataggctctcttctggattactgcaatagggaagtaattcctgtcttgaaatct 634

                                                                       
Query: 300 gtctctttacctttttatgtttttagaaatgttaataatttactgcatataaaaattctg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtctctttacctttttatgtttttagaaatgttaataatttactgcatataaaaattctg 574

                                                                       
Query: 360 aagcgatttaatttttttctcacctgacaatttaaaaagccctttgataagaagaaaaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aagcgatttaatttttttctcacctgacaatttaaaaagccctttgataagaagaaaaga 514

                                                                       
Query: 420 aaagattttgcagctaaaaactgtgtttgtcgagcatttgtatattctgacccctgaaat 479
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 513 aaagattttgcagctaaaaactgtgtatgtccagcatttgtatattctgacccctgaaat 454

                                                                       
Query: 480 acaatcaatttcatgatatttaacatcaaggaacactttccaaagaaattcctcatgaca 539
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 453 acaatcaatttcatgatatttaacatcaaggaacattttccaaagaaattcctcatgact 394

                                                    
Query: 540 atggccaatttatgtggcctaaatatgttctgtatgtctat 580
            ||||| |||||||||||||||||| |||||||||||||||
Sbjct: 393 gtggccgatttatgtggcctaaataggttctgtatgtctat 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)