BAC Information

Click to search

BAC

Clone NameMSMg01-498L14
Chromosome4 (Build37)
Map Location 55,553,277 - 55,741,121
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498L14.T7 (MSMg01no498_l14.b1)MSMg01-498L14.TJ (MSMg01no498_l14.g1)
ACCAG574979AG574980
length759773
length of high quality
(start - end)		651 (49 - 699)582 (80 - 661)
definitionCHROMAT_FILE: MSMg01no498_l14.b1 PHD_FILE: MSMg01no498_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:53 2005CHROMAT_FILE: MSMg01no498_l14.g1 PHD_FILE: MSMg01no498_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,740,642 - 55,741,121)(55,553,277 - 55,553,858)
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCCACATGTCAGCTAACATGAACCCAGTGAACCCACAAAAT
CCTTTATGAAAGGACCAGGGCTCAGCTGCTACTGCAAAAGGCCCTTGGCT
AGGTTTAAGATTAGCCATAGTGTTGGGAAGGAAGCCTAAGTCAGACTCCT
TCCCTCCTTCCTTCATTTCTATGGATTGATGCTCTCATCATTTGTCTCTG
TATATATATATGCATATGCATATATGATGTATGTGTTCTCTGTGGCAGAC
TCTGTGATGGGCTCAAGGCAAACACTAATTGATTCAGCTCACTTCTGCCC
TGGAGGAGTTGTTCTCAGCCATGTGTGTCTGTGTGTGTGATGTGTCTGTA
TGTGTGTGTATCTGTGTGTTCAAGGAGTTAAGAGAGTAAGCATAAAGATA
GGCCATCACAATATTCAGGAGACCTTAGGAGCCTAGAAGCCTGAATTAGG
AACTCTATACATAGAATCATCTTTTGTATGGAGCTGGAATGTGGACCTGT
AATACAGAGAAGAGGAATAAGAACAGATCGACTACTGGATTGGGGAAATC
TTAGAACCAGTCTAAGGTCTCTGCTTTTTGGCCCCAACAAACAGGACTCA
CCATAGTTCTTACAGCAAGAAATAAACTAGAACCTTATTTCTAATTCCTT
AACTCAAATGCAGTTTGATCTGCATTCCCAAACTTGTTGCCCCTGGGCTT
AGAAATCAN

NNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGACTATGGAAGATGGAA
GAATGGTAGGAAGTGGAAGCGTGCCAAGACTGCTGGGGGAAAGTCATGAA
TGATGCCACCCAAGTAATTAGCCTGAGGTCCCGATGACCTTTAGCACATC
GTTCATATGGTCGCAGTGCATCTGACTGTGAGAAGGGCTTGAATATATGT
GCTTCATAGACTACGGTGAACATTAATTGAAACTGTAGGCATGAAAGGTG
CCAATCAATATTACTTTTGTCCCTCAATCTGTGAGACTCTACATAGTTAA
TTACTTCTTCATTATACAATGCTGGGCCATGGTGAATTGTCTTGGTTCAA
AGATTGGGATGCACTGTCTCCCAGTTATTGTCCTCCAGTAAGCATCACTG
CATTTGGGTTACTCAGGCATTTATGGCAGTAAGTTCTGACTTCTTTCCAA
CTCTGAAAGCACAGAAACTGTACTAAAGTTAGAATTGAACTGGAGTCCCC
CCACTGTCCTAGCCTGCACCCACAGAATCAGAGGCCTGTTGAATCAAAGG
CTATTGCTCTTTGCTTGTGGAACTGGAATGAGAAAACAGGCATCTTGATT
GCTGTCCGAGCTCAGGCATTGGACAGCAGTGATGACAGAAGCCTGTGTTG
AGTGCTTCTGTGAGCCCCCTTCCCTCCTGTGTCAGTACACACCGCGCAAA
CAAGCTTCACCTAGGGCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_l14.b1 MSMg01no498_l14.b1 CHROMAT_FILE:
MSMg01no498_l14.b1 PHD_FILE: MSMg01no498_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:53 2005
         (651 letters)



>mm_chr4_55740071_55741121
          Length = 1051

 Score =  928 bits (480), Expect = 0.0
 Identities = 480/480 (100%)
 Strand = Plus / Minus

                                                                        
Query: 172  tatggattgatgctctcatcatttgtctctgtatatatatatgcatatgcatatatgatg 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 tatggattgatgctctcatcatttgtctctgtatatatatatgcatatgcatatatgatg 992

                                                                        
Query: 232  tatgtgttctctgtggcagactctgtgatgggctcaaggcaaacactaattgattcagct 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  tatgtgttctctgtggcagactctgtgatgggctcaaggcaaacactaattgattcagct 932

                                                                        
Query: 292  cacttctgccctggaggagttgttctcagccatgtgtgtctgtgtgtgtgatgtgtctgt 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  cacttctgccctggaggagttgttctcagccatgtgtgtctgtgtgtgtgatgtgtctgt 872

                                                                        
Query: 352  atgtgtgtgtatctgtgtgttcaaggagttaagagagtaagcataaagataggccatcac 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  atgtgtgtgtatctgtgtgttcaaggagttaagagagtaagcataaagataggccatcac 812

                                                                        
Query: 412  aatattcaggagaccttaggagcctagaagcctgaattaggaactctatacatagaatca 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  aatattcaggagaccttaggagcctagaagcctgaattaggaactctatacatagaatca 752

                                                                        
Query: 472  tcttttgtatggagctggaatgtggacctgtaatacagagaagaggaataagaacagatc 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  tcttttgtatggagctggaatgtggacctgtaatacagagaagaggaataagaacagatc 692

                                                                        
Query: 532  gactactggattggggaaatcttagaaccagtctaaggtctctgctttttggccccaaca 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  gactactggattggggaaatcttagaaccagtctaaggtctctgctttttggccccaaca 632

                                                                        
Query: 592  aacaggactcaccatagttcttacagcaagaaataaactagaaccttatttctaattcct 651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631  aacaggactcaccatagttcttacagcaagaaataaactagaaccttatttctaattcct 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no498_l14.g1 MSMg01no498_l14.g1 CHROMAT_FILE:
MSMg01no498_l14.g1 PHD_FILE: MSMg01no498_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:53 2005
         (582 letters)



>mm_chr4_55553077_55554058
          Length = 982

 Score = 1118 bits (578), Expect = 0.0
 Identities = 581/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggactatggaagatggaagaatggtaggaagtggaagcgtgccaagactgctggggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggactatggaagatggaagaatggtaggaagtggaagcgtgccaagactgctggggg 260

                                                                       
Query: 61  aaagtcatgaatgatgccacccaagtaattagcctgaggtcccgatgacctttagcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtcatgaatgatgccacccaagtaattagcctgaggtcccgatgacctttagcacat 320

                                                                       
Query: 121 cgttcatatggtcgcagtgcatctgactgtgagaagggcttgaatatatgtgcttcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgttcatatggtcgcagtgcatctgactgtgagaagggcttgaatatatgtgcttcatag 380

                                                                       
Query: 181 actacggtgaacattaattgaaactgtaggcatgaaaggtgccaatcaatattacttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actacggtgaacattaattgaaactgtaggcatgaaaggtgccaatcaatattacttttg 440

                                                                       
Query: 241 tccctcaatctgtgagactctacatagttaattacttcttcattatacaatgctgggcca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccctcaatcagtgagactctacatagttaattacttcttcattatacaatgctgggcca 500

                                                                       
Query: 301 tggtgaattgtcttggttcaaagattgggatgcactgtctcccagttattgtcctccagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtgaattgtcttggttcaaagattgggatgcactgtctcccagttattgtcctccagt 560

                                                                       
Query: 361 aagcatcactgcatttgggttactcaggcatttatggcagtaagttctgacttctttcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcatcactgcatttgggttactcaggcatttatggcagtaagttctgacttctttcca 620

                                                                       
Query: 421 actctgaaagcacagaaactgtactaaagttagaattgaactggagtccccccactgtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actctgaaagcacagaaactgtactaaagttagaattgaactggagtccccccactgtcc 680

                                                                       
Query: 481 tagcctgcacccacagaatcagaggcctgttgaatcaaaggctattgctctttgcttgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagcctgcacccacagaatcagaggcctgttgaatcaaaggctattgctctttgcttgtg 740

                                                     
Query: 541 gaactggaatgagaaaacaggcatcttgattgctgtccgagc 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaactggaatgagaaaacaggcatcttgattgctgtccgagc 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |