BAC Information

Click to search

BAC

Clone NameMSMg01-498P16
Chromosome4 (Build37)
Map Location 133,755,367 - 133,923,897
singlet/doubletdoublet
Overlap geneEG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1
Upstream geneGpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21
Downstream geneLOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498P16.T7 (MSMg01no498_p16.b1)MSMg01-498P16.TJ (MSMg01no498_p16.g1)
ACCAG575172AG575173
length748754
length of high quality
(start - end)		645 (81 - 725)314 (333 - 646)
definitionCHROMAT_FILE: MSMg01no498_p16.b1 PHD_FILE: MSMg01no498_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:14 2005CHROMAT_FILE: MSMg01no498_p16.g1 PHD_FILE: MSMg01no498_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:15 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(133,755,367 - 133,756,011)(133,923,584 - 133,923,897)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCCCAGTCTTGCGATAGATTGGTCTTTTTTCTTAGTCTGGAA
TGGTCTAATGGCAAAGATTTGAATCCACCAAAGTCAAGAGTTACCCAACC
CCTCCTTTCCCAGGCCCACCCCACACCCTTCCCAGCTCCACCCCACAGCT
TTCCCAGCCCCTCCCATAGCTGTCCAAGCCCCTCCCATGGCTTTCCCTGC
CCCACCCCACAGCTTTCCCAGCCCCGCCCACAACTTTCCCCTTCCTCTTT
TTTTTTTTAATTGATGTAGACATAATGTAAGCTAGAGATTTATGTTTTAT
ATTTAAACATAACCTTATAGATAGTATACTGGCCTCCTGTGTAGGGGGAT
ATCCTTCATACATAACTGCTTCCCCTAACTGCTTCTCCTCTTTTCCTTGG
GCTACTAGTCATTCAATATGCTTGTAGACCTGTTCAGGTGCTTGTTGACA
TAAAGTCTTGAAGATATTTAGATGAAGGTGTCTTGAAATTTGCAGGCACA
AAGAACTAAAGTATATCATCATATCAAATGAAGAAATAAATGACCATTGC
TATCCACAGAACAACATATTCATCTATAAAATTATTAAAGTATTGGTCTA
AAAATAAAAGACCTGGCCCAATAAAGACAGTGTCTTGAAGATATAGTTCA
CTTTTCGTCATGTGAGCTATCACCAATTTTTGTGCAACATTATCAAAA

CCCATGATAGTGNGTAGGCCGGGNGGNCGCCCGGCTGCTTACTGGGGGNG
ANACNANACAAGGATTACAACAATCCGGGNGGNACAAAGGGGNACACAGN
CAAAAGNCCCCCTCCCACCTGTTTTGGCCACACAGGTTTCCTTGCTTAAG
CTTCTCGGGTGTCTCTCTTTCCTGGGGAGCTCTGTATAGCCAGGGCATAT
GAACCCCTACATACCTCTTCTTTTTGTTATTCTGGATTTTTCTAGACAGA
GTCATTTTTAGCCCAGACTGTATGAAAAATTATTTTGAACTCCCAATCCT
CCTGCCTCCACTGCCCAAGTACTGAGTTTTTAGGGGTGTGGCCACCAGGT
CTGGCTCCTCCTTTTTTACATTTCTGTACCTGCCTGTGGTGTGCATACAT
GCATACTACTTCACCTTCACGTGGCCACACGCATGGGGGATACATGTGTA
CAGGCGTGTACATACGTGGGGAAGCCCAAAGCTGACAGCCAATTCCTCGA
TCTCTCTTTACCTTATCCATTGAGGCAGGGTCTCTCACCTGAACCCAGAG
CTTGCCTGTTCACCTAGTCTAGCTAGCCAGCTTGCCCAAGAGGTCCCATC
TCCATATACTTCATGTTGAGATGGGCTTAGCTGGGGGCTGGGGAATCCAG
CGTCTAGGCTTTTATTTATTATGGCTTTAGAACTGGGCAATGGTGGCTCA
CACCTTTAATCCAAGGCAGGTGGATCCCTGAGTTCTGAGGCCAACCTGGT
CTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_p16.b1 MSMg01no498_p16.b1 CHROMAT_FILE:
MSMg01no498_p16.b1 PHD_FILE: MSMg01no498_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:14 2005
         (645 letters)



>mm_chr4_133755167_133756211
          Length = 1045

 Score = 1239 bits (641), Expect = 0.0
 Identities = 644/645 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttttcttagtctggaatggtctaatggcaaagatttgaatccaccaaagtcaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttttcttagtctggaatggtctaatggcaaagatttgaatccaccaaagtcaagag 260

                                                                       
Query: 61  ttacccaacccctcctttcccaggcccaccccacacccttcccagctccaccccacagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacccaacccctcctttcccaggcccaccccacacccttcccagctccaccccacagct 320

                                                                       
Query: 121 ttcccagcccctcccatagctgtccaagcccctcccatggctttccctgccccaccccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcccagcccctcccatagctgtccaagcccctcccatggctttccctgccccaccccac 380

                                                                       
Query: 181 agctttcccagccccgcccacaactttccccttcctctttttttttttaattgatgtaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctttcccagccccgcccacaactttccccttcctctttttttttttaattgatgtaga 440

                                                                       
Query: 241 cataatgtaagctagagatttatgttttatatttaaacataaccttatagatagtatact 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataatggaagctagagatttatgttttatatttaaacataaccttatagatagtatact 500

                                                                       
Query: 301 ggcctcctgtgtagggggatatccttcatacataactgcttcccctaactgcttctcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcctcctgtgtagggggatatccttcatacataactgcttcccctaactgcttctcctc 560

                                                                       
Query: 361 ttttccttgggctactagtcattcaatatgcttgtagacctgttcaggtgcttgttgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttccttgggctactagtcattcaatatgcttgtagacctgttcaggtgcttgttgaca 620

                                                                       
Query: 421 taaagtcttgaagatatttagatgaaggtgtcttgaaatttgcaggcacaaagaactaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagtcttgaagatatttagatgaaggtgtcttgaaatttgcaggcacaaagaactaaa 680

                                                                       
Query: 481 gtatatcatcatatcaaatgaagaaataaatgaccattgctatccacagaacaacatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatatcatcatatcaaatgaagaaataaatgaccattgctatccacagaacaacatatt 740

                                                                       
Query: 541 catctataaaattattaaagtattggtctaaaaataaaagacctggcccaataaagacag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catctataaaattattaaagtattggtctaaaaataaaagacctggcccaataaagacag 800

                                                        
Query: 601 tgtcttgaagatatagttcacttttcgtcatgtgagctatcacca 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtcttgaagatatagttcacttttcgtcatgtgagctatcacca 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no498_p16.g1 MSMg01no498_p16.g1 CHROMAT_FILE:
MSMg01no498_p16.g1 PHD_FILE: MSMg01no498_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:15 2005
         (314 letters)



>mm_chr4_133923577_133924290
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggtgtggccaccaggtctggctcctccttttttacatttctgtacctgcctgtggtgt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ggggtgtggccaccaggtctggctcctccatttttacatttctgtacctgcctgtggtgt 262

                                                                       
Query: 61  gcatacatgcatactacttcaccttcacgtggccacacgcatgggggatacatgtgtaca 120
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 261 gcatacatgcatactacttcacctttatgtggccacacgcatgggggatacatgtgtaca 202

                                                                       
Query: 121 ggcgtgtacatacgtggggaagcccaaagctgacagccaattcctcgatctctctttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcgtgtacatacgtggggaagcccaaagctgacagccaattcctcgatctctctttacc 142

                                                                       
Query: 181 ttatccattgaggcagggtctctcacctgaacccagagcttgcctgttcacctagtctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttatccattgaggcagggtctctcacctgaacccagagcttgcctgttcacctagtctag 82

                                                                       
Query: 241 ctagccagcttgcccaagaggtcccatctccatatacttcatgttgagatgggcttagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 81  ctagccagcttgcccaagaggtcccatctccatatacttcatgttgagatgggtttagct 22

                         
Query: 301 gggggctggggaat 314
           ||||||||||||||
Sbjct: 21  gggggctggggaat 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |