Query= MSMg01no499_g20.b1 MSMg01no499_g20.b1 CHROMAT_FILE:
MSMg01no499_g20.b1 PHD_FILE: MSMg01no499_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:48 2005
(244 letters)
>mm_chr4_42458511_42459154
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Plus
Query: 1 tagaatatattttggtcatacttccctcttccccagcttcttccagatcttctctgccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaatatattttggtcatacttccctcttccccagcttcttccagatcttctctgccca 260
Query: 61 catattgttacacataaattcatggtgctactcagtcctcatcatccacaactggacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catattgttacacataaattcatggtgctactcagtcctcatcatccacaactggacaag 320
Query: 121 gtggagggaagagggagactctggagcactcagccttaagtggatgtctttattaagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggagggaagagggagactctggagcactcagccttaagtggatgtctttattaagata 380
Query: 181 cctcctgccaacgcttagggatctgtgtggaagatgaagcagaaagattgaagagccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcctgccaacgcttagggatctgtgtggaagatgaagcagaaagattgaagagccagt 440
Query: 241 ggat 244
||||
Sbjct: 441 ggat 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no499_g20.g1 MSMg01no499_g20.g1 CHROMAT_FILE:
MSMg01no499_g20.g1 PHD_FILE: MSMg01no499_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:48 2005
(647 letters)
>mm_chr4_41847837_41848883
Length = 1047
Score = 1187 bits (614), Expect = 0.0
Identities = 642/658 (97%), Gaps = 11/658 (1%)
Strand = Plus / Plus
Query: 1 tttctctccttcacttgccttagtaactaaattagtgttttgactattgtggtggtttga 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tttctctccttcacttgccttagtaactaaattagtattttgactattgtggtggtttga 260
Query: 61 atgcttgaccataggaaatggcattattaggaggtgtggccttgttggaggaagtgtgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcttgaccataggaaatggcattattaggaggtgtggccttgttggaggaagtgtgtc 320
Query: 121 actgtgtaggtgggactttgaggtctcctatgctcagcctctgcacaatgcagatggtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtgtaggtgggactttgaggtctcctatgctcagcctctgcacaatgcagatggtag 380
Query: 181 tctccttctggctgcctttgcatcaagatgtagaactctcagctccttctccagcaccat 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctccttctagctgcctttgcatcaagatgtagaactctcagctccttctccagcaccat 440
Query: 241 gtctgcctggatgctgccatgctttccaccgtgatgataaccggactgaatctctgaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctgcctggatgctgccatgctttccaccgtgatgataaccggactgaatctctgaact 500
Query: 301 gtaagcctgccccaactgaatgtttagctgttttcatcaggtctcttggcacaccaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaagcctgccccaactgaatgtttagctgttttcatcaggtctcttggcacaccaaaga 560
Query: 361 gacaagtaactagtgtccctgtcggagagatgcagctggggagggcttagcagcaggtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacaagtaactagtgtccctgtcggagagatgcagctggggagggcttagcagcaggtga 620
Query: 421 ggttgctggctgcacacatgtgacggggatacaggacactgctcccctttgttcctggcc 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggttgctggctgcacacacgtgacggggatacaggacactgctcccctttgttcctggcc 680
Query: 481 attctgagatgagcagtttttcttgaccctatgcagctgacaatgataagctgtctcatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attctgagatgagcagtttttcttgaccctatgcagctgacaatgataagctgtctcatc 740
Query: 541 acctaacacagccaaactcactgatcatgatctaaactctctgaaacgggggatggagag 600
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acctaaaacagccaagctcactgatcatgatctaaactctctgaaacgggggatggagag 800
Query: 601 atggctcagcagttaagagcactgggggggggg-----------agctttttcaaaag 647
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 801 atggctcagcagttaagagcactgggggggggggggagggggggagctttttcaaaag 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
