BAC Information

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BAC

Clone NameMSMg01-499K21
Chromosome4 (Build37)
Map Location 32,041,963 - 32,187,233
singlet/doubletdoublet
Overlap geneMap3k7, LOC665218
Upstream geneLOC100040891
Downstream geneLOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499K21.T7 (MSMg01no499_k21.b1)MSMg01-499K21.TJ (MSMg01no499_k21.g1)
ACCAG575704AG575705
length757724
length of high quality
(start - end)		644 (74 - 717)542 (58 - 599)
definitionCHROMAT_FILE: MSMg01no499_k21.b1 PHD_FILE: MSMg01no499_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:07 2005CHROMAT_FILE: MSMg01no499_k21.g1 PHD_FILE: MSMg01no499_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,041,963 - 32,042,606)(32,186,692 - 32,187,233)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTTAACCATCTCAGTTTTGTTTAATACAAAGTTAAACAGCCAATTAA
AATGTAAGGCAGAAAAACGCCTCAAAGTTCCAAAGCAGAGGCGTCTTTCT
CGTTTTGCCTGCTGAGTCTTTCACATTCTTAGATTGAACGGCATCTCAAG
TCTAAGGTGTCTGCTGATTCCATGTCCTATTACAGTCCCGCGGCTAAATT
GTGCTGGTTCCAGAAATATTTCTTGGACCAGCTCAATACGTTTCAGTGGA
GGAGAATTCTCAATTCTGATAGTATCTATTTCTCTACAAATTAAGTTGGA
GACCTAGGATATAATATATTCTTCGTTTTCCAAAATGGATCAATTCCTGG
CTTATTAAAGTTGATAATGAGTCCTTTAGAAAAAGGCAGAAATCAATTCT
ATGCAGCAGATTTAGTTAAGCAACCTCATTAAGACCAAAGGCAACTCTAT
TTTTGTTAGTTTAATAAAGATCATATGTCAATTAAAATATGCTATTGTTT
TTCTTTAATAGAGATGGCTTATATTGACTGATAAACTTTTGGATTCTGAA
TGTACTTGTAGAACTTACTGAAATTGATTAAGAATTGCTTAATTTAATCT
CAAATTTAAATTTGCCTTTAGGCTGTGAACGTCATCCAACTTTGATTGAG
ATAATCACTAACTTACCTTAAGCAGCCATCATTTATCAAGAAGCCAGGAA
GGTGTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCACTTGACACTGTATTGTATTGCGCATTCATTTCCTTGTGTT
ATCTTTCCTCCTAGGCGGTCTTTCTCCAACTTCAGTGTACACAGGAGCCC
ATCTACAGGAGGTTCATTGAGCTTGTAAAATTCAGACCATTTCTTTAGGT
CTGGCAGGATCTGGGCATGTCCAACCAAGTGGCAGGTGATAGAGATATTG
CTGATACAAGGACAGAATTTCAAAATCAACTTCTGAAGGTAGGTGGGATG
AGACTAGGGAATTTTGTGTACCTCATCCTCATTGAACATCCTCCTTTGGT
TCATACTTGAGGTCATTTTATAATTAATTTCAAAGGGAGGAGAGTCTCAC
AGATGTTAATACGGGGCACGTGGACTGTTTGAGATGAAAGGAACATAAAC
ATATCATAACTCCACTGAAAGTCCTTTTGAGGGTGGGCAGCTGCATGCTG
TCTGTGCAGACCTCAGGTTGGGAATTCCAGACAAAACCATCCTGCTCAGC
CCAGGAGCTTGGCCTACCCTGCCAATCCTGCTATCTTGAGCTCTTCCAGG
CTCAGAGCTGCTGTACAGCCAGACCCGCAGCAAAACTGAGCATATAGTCA
TCTGAACAACACCTCTAAGCCAAGCCTGATGCTGCAGAAAATATGGGGAA
GTGTTGCTTGTTTCAGCTGTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_k21.b1 MSMg01no499_k21.b1 CHROMAT_FILE:
MSMg01no499_k21.b1 PHD_FILE: MSMg01no499_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:07 2005
         (644 letters)



>mm_chr4_32041763_32042806
          Length = 1044

 Score = 1245 bits (644), Expect = 0.0
 Identities = 644/644 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatacaaagttaaacagccaattaaaatgtaaggcagaaaaacgcctcaaagttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatacaaagttaaacagccaattaaaatgtaaggcagaaaaacgcctcaaagttccaa 260

                                                                       
Query: 61  agcagaggcgtctttctcgttttgcctgctgagtctttcacattcttagattgaacggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagaggcgtctttctcgttttgcctgctgagtctttcacattcttagattgaacggca 320

                                                                       
Query: 121 tctcaagtctaaggtgtctgctgattccatgtcctattacagtcccgcggctaaattgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaagtctaaggtgtctgctgattccatgtcctattacagtcccgcggctaaattgtg 380

                                                                       
Query: 181 ctggttccagaaatatttcttggaccagctcaatacgtttcagtggaggagaattctcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggttccagaaatatttcttggaccagctcaatacgtttcagtggaggagaattctcaa 440

                                                                       
Query: 241 ttctgatagtatctatttctctacaaattaagttggagacctaggatataatatattctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgatagtatctatttctctacaaattaagttggagacctaggatataatatattctt 500

                                                                       
Query: 301 cgttttccaaaatggatcaattcctggcttattaaagttgataatgagtcctttagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgttttccaaaatggatcaattcctggcttattaaagttgataatgagtcctttagaaaa 560

                                                                       
Query: 361 aggcagaaatcaattctatgcagcagatttagttaagcaacctcattaagaccaaaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcagaaatcaattctatgcagcagatttagttaagcaacctcattaagaccaaaggca 620

                                                                       
Query: 421 actctatttttgttagtttaataaagatcatatgtcaattaaaatatgctattgtttttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actctatttttgttagtttaataaagatcatatgtcaattaaaatatgctattgtttttc 680

                                                                       
Query: 481 tttaatagagatggcttatattgactgataaacttttggattctgaatgtacttgtagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttaatagagatggcttatattgactgataaacttttggattctgaatgtacttgtagaa 740

                                                                       
Query: 541 cttactgaaattgattaagaattgcttaatttaatctcaaatttaaatttgcctttaggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttactgaaattgattaagaattgcttaatttaatctcaaatttaaatttgcctttaggc 800

                                                       
Query: 601 tgtgaacgtcatccaactttgattgagataatcactaacttacc 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtgaacgtcatccaactttgattgagataatcactaacttacc 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no499_k21.g1 MSMg01no499_k21.g1 CHROMAT_FILE:
MSMg01no499_k21.g1 PHD_FILE: MSMg01no499_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:07 2005
         (542 letters)



>mm_chr4_32186492_32187433
          Length = 942

 Score = 1048 bits (542), Expect = 0.0
 Identities = 542/542 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacttgacactgtattgtattgcgcattcatttccttgtgttatctttcctcctaggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccacttgacactgtattgtattgcgcattcatttccttgtgttatctttcctcctaggcg 683

                                                                       
Query: 61  gtctttctccaacttcagtgtacacaggagcccatctacaggaggttcattgagcttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtctttctccaacttcagtgtacacaggagcccatctacaggaggttcattgagcttgta 623

                                                                       
Query: 121 aaattcagaccatttctttaggtctggcaggatctgggcatgtccaaccaagtggcaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaattcagaccatttctttaggtctggcaggatctgggcatgtccaaccaagtggcaggt 563

                                                                       
Query: 181 gatagagatattgctgatacaaggacagaatttcaaaatcaacttctgaaggtaggtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gatagagatattgctgatacaaggacagaatttcaaaatcaacttctgaaggtaggtggg 503

                                                                       
Query: 241 atgagactagggaattttgtgtacctcatcctcattgaacatcctcctttggttcatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atgagactagggaattttgtgtacctcatcctcattgaacatcctcctttggttcatact 443

                                                                       
Query: 301 tgaggtcattttataattaatttcaaagggaggagagtctcacagatgttaatacggggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaggtcattttataattaatttcaaagggaggagagtctcacagatgttaatacggggc 383

                                                                       
Query: 361 acgtggactgtttgagatgaaaggaacataaacatatcataactccactgaaagtccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acgtggactgtttgagatgaaaggaacataaacatatcataactccactgaaagtccttt 323

                                                                       
Query: 421 tgagggtgggcagctgcatgctgtctgtgcagacctcaggttgggaattccagacaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgagggtgggcagctgcatgctgtctgtgcagacctcaggttgggaattccagacaaaac 263

                                                                       
Query: 481 catcctgctcagcccaggagcttggcctaccctgccaatcctgctatcttgagctcttcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catcctgctcagcccaggagcttggcctaccctgccaatcctgctatcttgagctcttcc 203

             
Query: 541 ag 542
           ||
Sbjct: 202 ag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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