Query= MSMg01no500_h19.b1 MSMg01no500_h19.b1 CHROMAT_FILE:
MSMg01no500_h19.b1 PHD_FILE: MSMg01no500_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:08 2005
(652 letters)
>mm_chr4_36837930_36838982
Length = 1053
Score = 880 bits (455), Expect = 0.0
Identities = 479/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 16 gaattcattatgctccttgacaa-tttctctcataataacttgatatttatattaataat 74
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattcattatgctccttgacaattttctctcataataacttgatatttatattaataat 431
Query: 75 caagatgttctatctcattgttccttgtattcctcatgagttttgcatcattgatctccc 134
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cacgatgttctatctcattgttccttgtattcctcatgagttttgcatcattgatctccc 371
Query: 135 ttaacactacttagcaaagaaatgtgaaacttgacatagcaagttggtaaaaccaacact 194
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 370 ttaacactacttagcaaagaaatgtgaaacttgacatagcaagttggtcaaaccaacact 311
Query: 195 cagacaagagtccaaattttaaaagcttcattcttaactgatttgcttcagggctgtagt 254
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cagacaagtgtccaaattttaaaagcttcattcttaactgatttgcttcagggctgtagt 251
Query: 255 agaaaacatattgtgtccggtgttagatttaggtaaatgcttctcaaagcaaggttttag 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agaaaacatattgtgtccggtgttagatttaggtaaatgcttctcaaagcaaggttttag 191
Query: 315 atcagcaatatttgccttatctggaatcatgtttgaaatacaaatttcttggttatatta 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atcagcaatatttgccttatctggaatcatgtttgaaatacaaatttcttggttatatta 131
Query: 375 taccagagaagtggactttgtattgaggagggcctatcaagcaatgtttgaataaacttc 434
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 130 taacagagaagtggactttgtattgaggagggcctatcaagctgtgtttgaataaacttc 71
Query: 435 ttttgtaaccaatccaagtttcaaatctctgctttgttactcagatccattagaattatg 494
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 70 ttttgtaaccaatccaagtttcaaatctctgctttgttactcagttccattagaattatg 11
Query: 495 tacaaat 501
|||||||
Sbjct: 10 tacaaat 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_h19.g1 MSMg01no500_h19.g1 CHROMAT_FILE:
MSMg01no500_h19.g1 PHD_FILE: MSMg01no500_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:08 2005
(169 letters)
>mm_chr10_59494246_59494811
Length = 566
Score = 288 bits (149), Expect = 1e-82
Identities = 163/169 (96%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 1 gatgatatgaggtcacttgatctgcttcaaggccccttgtcccctgggagtgagcgcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgatatgaggtcacttgatctgcttcaaggccccttgtcccctgggagtgagcgcttt 260
Query: 61 gacgtaggatggggggaggaggaggaggacacaattcagtccttaacattggaggcaggg 120
|||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 261 gacgtaggatggggggaggaggagga---cacaattcagtccttaaccttggagacaggg 317
Query: 121 cagcccaggctgacattgaacgcctcatgcccctgactttggcccacga 169
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 318 cagcccaggctgacattgaatgcctcatgcccctgactttggcccacga 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 566
Length adjustment: 8
Effective length of query: 161
Effective length of database: 558
Effective search space: 89838
Effective search space used: 89838
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
