Query= MSMg01no500_k03.b1 MSMg01no500_k03.b1 CHROMAT_FILE:
MSMg01no500_k03.b1 PHD_FILE: MSMg01no500_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
(576 letters)
>mm_chr4_122941885_122942860
Length = 976
Score = 1009 bits (522), Expect = 0.0
Identities = 560/580 (96%), Gaps = 16/580 (2%)
Strand = Plus / Plus
Query: 6 gaattcatttccgatcc-ttccctggtgattataggttgacccagagatcacaatttaaa 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatttccga-ccattccctggtgattataggttgacccagagatcacaatttaaa 262
Query: 65 gaacattgaagttttcaacctgtgggccctggcccctttggggggagggggtcaaaccac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaacattgaagttttcaacctgtgggccctggcccctttggggggagggggtcaaaccac 322
Query: 125 cctttcacaggaattgcttatgaccatcagaaaacaga--tttacctttaccattcataa 182
|||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 323 cctttcacaggagttgcttaagaccatcagaaaacagagctttacctttaccattcataa 382
Query: 183 cagtagcaaaattacagttatgaagcagcagtggaataattttactgttgggggtcacca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagtagcaaaattacagttatgaagcagcagtggaataattttactgttgggggtcacca 442
Query: 243 caacatgaacctgacccattgaagaagggtttttttc------ttaggaaggttgagacc 296
|||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct: 443 caacatgaacatgacccattgaagaagggt------cacagccttaggaaggttgagacc 496
Query: 297 cgctgctgccgtggacagattgggctggaaggagcagcttgtgaactgtaggagagcttg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cgctgctgccgtggacagattgggctggaaggagcagcttgtgaactgtaggagagcttg 556
Query: 357 caacccatcctccccaggaggttagaaacaccccaccccacccctggcccacatggtggt 416
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caacccatccttcccaggaggttagaaacaccccaccccacccctggcccacatggtggt 616
Query: 417 ggggtccagctgtttcagctgccattgtctttccaacaccagcttcttctgggctcagaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggggtccagctgtttcagctgccattgtctttccaacaccagcttcttctgggctcagaa 676
Query: 477 ggcaataatgctacttaggtggaaacaggactaaactccctgaaaggagggaagctagag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggcaataatgctacttaggtggaaacaggactaaactccctgaaaggagggaagctagag 736
Query: 537 aaaccctgtcaaatgtcccataaaggcaagcgggaaataa 576
||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaaccctgtcaaatgtcccataaaggcaagcgggaaataa 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_k03.g1 MSMg01no500_k03.g1 CHROMAT_FILE:
MSMg01no500_k03.g1 PHD_FILE: MSMg01no500_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
(314 letters)
>mm_chr4_123026500_123027213
Length = 714
Score = 600 bits (310), Expect = e-176
Identities = 313/314 (99%)
Strand = Plus / Minus
Query: 1 atgaactgtttaaaaacaagacacacttttgtattaaaattgcttgcagtaacaatgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atgaactgtttaaaaacaagacacacttttgtattaaaattgcttgcagtaacaatgttt 455
Query: 61 tgtaattcttggctttattctgaaccactactttatatttaaatgttaccgctaaggtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgtaattcttggctttattctgaaccactactttatatttaaatgttaccgctaaggtat 395
Query: 121 aaaaatgttgtagtacttaaaaacatcattgaacaagagttttcttgatggaaaaaaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaaaatgttgtagtacttaaaaacatcattgaacaagagttttcttgatggaaaaaaatc 335
Query: 181 atagaactcattacttttttttctttatcttaccttgttaattttaacgaggcaccagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atagaactcattacttttttttctttatcttaccttgttaattttaacgaggcaccagag 275
Query: 241 aagtgggatgttttcacacagatatagggaagggatcctgtctacctacatattacaacg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aagtgggatgttttcacacagatatagggaagggatcctgtctacctacatattacaaca 215
Query: 301 gatagtgtgagcag 314
||||||||||||||
Sbjct: 214 gatagtgtgagcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
