XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAA
TGGTTACATTAAATGGCTCAAAAATCCATGACTGAATATGCAATAGGGCC
TAGGGCAGATCCTAATACTATTCTACTATAAACATAGTAGTAAACTGTCT
GCTAAGTTTGTATTTTGACATTAACAGACATACTCATCTCTCAATTCTCA
CCAGAGAAACTTCTTTTTATAGTATATGATTACTAGTATAAAGAGACCCA
ACTGGTCAACTTGCAGAGAATAAGAGCCCATGGAATTCTCAGTACTAAGC
AGAACAGATATTCATTCCTTTTCCCTACAATGTTTAGGGTATCATTGCAG
TAGAGTAGGCAGGAAGGCTGTACAATCCAGAAATAGTAGATACCTACAGT
GAAATTTAATTTATGGAACATGGCAGGGTCATCTCCTACATAAACTCACA
GCAAATGTGAGTGCATGTATAAGACCTATACAAGATCGAGTGAGCCAAGA
CCCACATCTATTATGGAAGGGACTGCCGTTCTTGGTTGAGAAGATACTGG
CAATTGATAGCTCCTGGTGCATTCAGTTGTCTCCTCTGAGAAGTTACCCA
GGTTCCAATAGATGACTACACCCATGCACATATGAACAATAATAAACTCA
GTGAGAATAGAAAAAAATCNGGAAAGGACATATATCATGGTATTGCAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATCCTTTATTATTAATTAATAATTAATTAATTAAATGCTCAA
GATGGAGTCCTGCATAAAAATACATCTTGGAAGAGTCATGACTTGGAAAG
GATTTTCATTTTCTATGCTACTGGATTTTCACTCTTTACTGATTTTCCAT
ATTTAGCATAAATTTATTTTTAGAGTATTCTATCAACTTTTCTATATTTA
CATTAGATTGCAACCAATGTCCCTGAATTCATCAGATGCCAAAGGTCAAA
CTTGTTTTCAAGACTATGGGGAAGTTTTTTTCCTAACTTATCTTAGATCT
TGTATTTCAGACGGTCTTGGCTTATGGCTGCATAACTCCAGTCTCTGCTT
CCTTATTGTGACCTTCTATTCTGGGTCTTCTTCTTTTCAGTATCTTCAGT
GAATATTGCCATGCCTATGTGAAATATCCAGGGTGATTTCATCTTGAGGT
ATTTAGTAATGTCCACCAAGACCCTTTTGCTAAGTAAAGTTATACCCACA
ACTCCTGGGACTTAAGATAGGTATACATATTTTAGGAGCATCCATCCTTC
CCATTAATGGGATGAGAGTTTAGGACCTATCTTATATTTGTTTATGTCAG
GGTACAATATATCTGGCTTTCCCTCAGTGCGATGATGTANGGTTGCC

Query= MSMg01no501_j23.g1 MSMg01no501_j23.g1 CHROMAT_FILE:
MSMg01no501_j23.g1 PHD_FILE: MSMg01no501_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:29 2005
         (539 letters)



>mm_chr4_15513215_15514154
          Length = 940

 Score =  922 bits (477), Expect = 0.0
 Identities = 522/537 (97%), Gaps = 1/537 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   cctttattattaattaataattaattaattaaatgctcaagatggag-tcctgcataaaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 774 cctttattattaattaataattaattaattaaatgctcaagatggagttcttgcagaaaa 715

                                                                       
Query: 63  atacatcttggaagagtcatgacttggaaaggattttcattttctatgctactggatttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 atacatcttggaagagtcatgacttggaaaggattttcattttctatgctactggatttt 655

                                                                       
Query: 123 cactctttactgattttccatatttagcataaatttatttttagagtattctatcaactt 182
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 654 cattctttactgattttccatagttagcataaatttatttttagagtattctatcaactt 595

                                                                       
Query: 183 ttctatatttacattagattgcaaccaatgtccctgaattcatcagatgccaaaggtcaa 242
           |||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||
Sbjct: 594 ttctatatttacattagattccaaccaatgtctctggactcatcagatgccaaaggtcaa 535

                                                                       
Query: 243 acttgttttcaagactatggggaagtttttttcctaacttatcttagatcttgtatttca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acttgttttcaagactatggggaagtttttttcctaacttatcttagatcttgtatttca 475

                                                                       
Query: 303 gacggtcttggcttatggctgcataactccagtctctgcttccttattgtgaccttctat 362
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 474 gacagtcttggcttatggctgcataactccagtctctgcttccttaatgtgaccttctat 415

                                                                       
Query: 363 tctgggtcttcttcttttcagtatcttcagtgaatattgccatgcctatgtgaaatatcc 422
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 414 tctgggtcttcttcttttcagtgtcttcagtgaatattgccatgtctatgtgaaatatcc 355

                                                                       
Query: 423 agggtgatttcatcttgaggtatttagtaatgtccaccaagacccttttgctaagtaaag 482
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 354 agggtgatttcatcttgagttatttagtaatgcccaccaagacccttttgctaagtaaag 295

                                                                    
Query: 483 ttatacccacaactcctgggacttaagataggtatacatattttaggagcatccatc 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttatacccacaactcctgggacttaagataggtatacatattttaggagcatccatc 238


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space:   491970
Effective search space used:   491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)