Query= MSMg01no501_k18.b1 MSMg01no501_k18.b1 CHROMAT_FILE:
MSMg01no501_k18.b1 PHD_FILE: MSMg01no501_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:32 2005
(604 letters)
>mm_chr4_101482324_101483329
Length = 1006
Score = 1007 bits (521), Expect = 0.0
Identities = 582/611 (95%), Gaps = 17/611 (2%)
Strand = Plus / Minus
Query: 4 ggaattccagag-----attctccatgaacttttaaaaatccttttctctataaattttc 58
|||||||||||| ||| ||||||||| |||||||| |||||||||||| ||
Sbjct: 826 ggaattccagagacatcatt----atgaactttaaaaaatccatttctctataaa---tc 774
Query: 59 -----tgctacaaatctcttccttttcttcgaccatggattgaagactgcaagaatatta 113
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 773 agaagtgctacaaatctcttccttttcttcgaccatggattgaagactgcaaggatatta 714
Query: 114 ggttaagatcatgcagataactagagcaaagcaaacaccatgacctagttctttttacag 173
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 713 ggttaagatcatgcagataactagagcaaagcaaacacaatgacctagttccttttacag 654
Query: 174 tacagtaaagataaaaacatttcctaaacacagacagagagaagagggaccctccatctt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tacagtaaagataaaaacatttcctaaacacagacagagagaagagggaccctccatctt 594
Query: 234 cctttgcccggccgcagaggtagacttaacctgactagttcatgatctctcctggctcct 293
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cctttgccccgccacagaggtagacttaacctgactagttcatgatctctcctggctcct 534
Query: 294 tattactccagattatgaaaggagaagaaaataaaggccatgagacacaggctgctaggc 353
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 533 tattactccagattatgaaaggagaagaaaataaattccatgagacacaggctgctaggc 474
Query: 354 cagtgttatgactgacagagactggctctctctaactaaaactctgactccaaaaactag 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cagtgttatgactgacagagactggctctctctaactaaaactctgactccaaaaactag 414
Query: 414 cctgctcttctacatatttccaaggagaatctagctgtttccagatacagtctacccaga 473
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 413 cctgctcttctacatatttccaaggagaatctagctgtttccagatacattctacccaga 354
Query: 474 gccacagttgttaggttgtctggattgctatggcatgtctaaagtcaaggaagtctttag 533
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gccacaattgttaggttgtctggattgctatggcatgtctaaagtcaaggaagtctttag 294
Query: 534 tcccaagggcaagttccctgggctcttggttttagatttatatttaatcataaagtgaat 593
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tcgcaagggcaagttccctgggctcttggttttagatttatatttaatcataaagtgaat 234
Query: 594 tgttaagctca 604
|||||||||||
Sbjct: 233 tgttaagctca 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1006
Length adjustment: 10
Effective length of query: 594
Effective length of database: 996
Effective search space: 591624
Effective search space used: 591624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_k18.g1 MSMg01no501_k18.g1 CHROMAT_FILE:
MSMg01no501_k18.g1 PHD_FILE: MSMg01no501_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:32 2005
(570 letters)
>mm_chr4_101391989_101392958
Length = 970
Score = 1087 bits (562), Expect = 0.0
Identities = 568/570 (99%)
Strand = Plus / Plus
Query: 1 ttttggcagatactgtattgcatttttttttatccttagaggcaaacactcatactaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggcagatactgtattgcatttttttttatccttagaggcaaacactcatactaaaa 260
Query: 61 aatatgtcctgtggagttaaaaatgaagagaaggcttacgctcagttcaaattcttaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgtcctgtggagttaaaaatgaagagaaggcttacgctcagttcaaattcttaaga 320
Query: 121 ttttatgtgatttacaaattccaattttaattaaattagaaaagtgcgaatgttcaccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatgtgatttacaaattccaattttaattaaattagaaaagtgcgaatgttcaccta 380
Query: 181 ctggccagactttgcacatacatgcttttggggttttctatttggatttgatcttttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggccagactttgcacatacatgcttttggggttttctatttggatttgatcttttaca 440
Query: 241 gttcagaatatttcttctgaagcacacacccacaccatcaaacaaacaatgtgtagctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcagaatatttcttctgaagcacacacccacaccatcaaacaaacaatgtgtagctca 500
Query: 301 ggctgatctcagactcatttcgttgtggaggatggccttgggtttctggagcctctgctg 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctgatctcagactcatttcgttgcggaggatggccttgggtttctggagcctctgctg 560
Query: 361 cctgggtgctgggattgcaggtctggcccacctggtgtatgtagtgctgggaatcaaacc 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggatgctgggattgcaggtctggcccacctggtgtatgtagtgctgggaatcaaacc 620
Query: 421 cagggcttcctaggcaagcactctgccgagtgagtggcacctgcagctcttttaagtaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagggcttcctaggcaagcactctgccgagtgagtggcacctgcagctcttttaagtaat 680
Query: 481 atctgcaaaatatctgttgtcttttcacacccatgatcttagtctttagctgtttttaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctgcaaaatatctgttgtcttttcacacccatgatcttagtctttagctgtttttaac 740
Query: 541 atttgaaccctgacaactatagggagaaat 570
||||||||||||||||||||||||||||||
Sbjct: 741 atttgaaccctgacaactatagggagaaat 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
