XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAG
AGTTTCCATTTGTTTTAGAGGAATACAGCATCTCTTCACCTTTGTAAGAG
AGATACTGATAGACTGGTTTGCTCAGAATGCTATGATGCTTAATTAAGGG
AGTTGGGGAAATTTATTTATATCCTTTTTTTGTATGATAGATTAAGTGTT
GTTTCTCAAGAGTTATGCTTCCCTGGGAAGCATTAGTGATGATACAGTTC
TTTTCATCTCAAGTGTGGATGAGTTCCATCATCTTCGAAGCCTGCTCTTG
TATTAAGTGTCATCAGTTTGGAATGATCTGTAAAGTGGAGCTATTCGGTT
CAGACAGTGCCTATGCTTAAGCACACAGGCTGTGAGGGAGTCCTGGGCCC
TGTGAGACAGACAGCCTCTCAGAAAGTTCACATGCTAGTGAACTAAATGT
CACTTTGAAAACGGGATCGTAGGCAGAATATCCAGATAAAACTTACACAC
TCCATGCTTTAAAACAAAACAAGTACTAGCTGCACTTTATATTTTAATAA
TAGAGAACCCGGGAGAAAGAAAAACGAGCCACTCAAAACAGAGATGCACA
CTGACTGCAAATTCTCTAATTTTCAGAGCTGTATCTCTGATACGTACTTA
TGGGTAGCAGTGAACTCACAATAATAAACCAAATAAAAACCCATCCCTTA
TTTTCATCTGCCATTCACTCTCGCCTTTCCTTCTGGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXGGAGGAGTCAATACCAGGAGGTTGAATTGGG
GACCATCTTCGTGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTGTCTCTGGGGGGGGGGAGAGAGAGAGAGAGAGGGAGAGA
AAGAAAGAGAGAGAGGTAGAGAAAGAAGAGGAGAGAGAAAGAGGAGAGAG
AAAGGGGAAAAAGAAAAAAGAGGGGCGAGAGAGAAAAGAGAGAGAGAGAG
TCAGCGAGACTGAGAAAGAATTATTTTTTAAGGAAAAAAGGGGAGTGGAG
GGCGGGCAAGAAATGGGGGGAGCAGAGTAAGGGGAGAGGAAAAAGAACGC
GAAGGAAAGGGAGAAAGAGAAAGAAAAAAATAAGGAGAGGAGGGGGAGGG
AAGGGAGAGGGAAGATGAGATAAAGAGAAAGGAAGAAATGGAGGAGGAAA
GAGAGAAGAAGATGGGAAAAAGTGCAGAAAAGAGGAGGTAAAGAGAAGAG
AGAAAGAAGAGGGGAGTAAGTGGAAGAGAAGAGGGAAAGAAAAAATGGGG
AAGAGAAAAGAGAGGGGGAAAAAAAGAGAAAGGAAAGAGAAAAGGGAGAA
GGGGGGAGGAGAGAGAGAAGTAAGGTAGTGGTGAGAAAGAAAGAAGAAAA
AGGAAAATGAAAAAGGTGGGGGAAAAGAGGGGGGGGGGAAGGAAAAAGGA
GGGGGGGAAAAGGAAAAAAAGAGAGGA

Query= MSMg01no501_n03.b1 MSMg01no501_n03.b1 CHROMAT_FILE:
MSMg01no501_n03.b1 PHD_FILE: MSMg01no501_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:43 2005
         (701 letters)



>mm_chr4_13125058_13126155
          Length = 1098

 Score = 1294 bits (669), Expect = 0.0
 Identities = 689/697 (98%), Gaps = 3/697 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcagagtttccatttgttttagaggaatacagcatctcttcacctttgtaaga 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcagagtaaccatttgttttagaggaatacagcatctcttcacctttgtaaga 264

                                                                       
Query: 65  gagatactgatagactggtttgctcagaatgctatgatgcttaattaagggagttgggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagatactgatagactggtttgctcagaatgctatgatgcttaattaagggagttgggga 324

                                                                       
Query: 125 aatttatttatatcctttttttgtatgatagattaagtgttgtttctcaagagttatgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatttatttatatcctttttttgtatgatagattaagtgttgtttctcaagagttatgct 384

                                                                       
Query: 185 tccctgggaagcattagtgatgatacagttcttttcatctcaagtgtggatgagttccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccctgggaagcattagtgatgatacagttcttttcatctcaagtgtggatgagttccat 444

                                                                       
Query: 245 catcttcgaagcctgctcttgtattaagtgtcatcagtttggaatgatctgtaaagtgga 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 catcttcgaagcctgctcttgtattaagtgtcatcagtttggaataatctgtaaagtgga 504

                                                                       
Query: 305 gctattcggttcagacagtgcctatgcttaagcacacaggctgtgagggagtcctgggcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctattcggttcagacagtgcctatgcttaagcacacaggctgtgagggagtcctgggcc 564

                                                                       
Query: 365 ctgtgagacagacagcctctcagaaagttcacatgctagtgaactaaatgtcactttgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtgagacagacagcctctcagaaagttcacatgctagtgaactaaatgtcactttgaa 624

                                                                       
Query: 425 aacgggatcgtaggcagaatatccagataaaacttacacactccatgctttaaaacaaaa 484
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 aactggatcgtaggcagaatatccagataaaacttacacactccatgctttagaacaaaa 684

                                                                       
Query: 485 caagtactagctgcactttatattttaataatagagaacccgggagaaagaaaaacgagc 544
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 685 caagtactagctgcactttatattttaata---gagaacccgggagaaagaaaaacgagc 741

                                                                       
Query: 545 cactcaaaacagagatgcacactgactgcaaattctctaattttcagagctgtatctctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cactcaaaacagagatgcacactgactgcaaattctctaattttcagagctgtatctctg 801

                                                                       
Query: 605 atacgtacttatgggtagcagtgaactcacaataataaaccaaataaaaacccatccctt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atacgtacttatgggtagcagtgaactcacaataataaaccaaataaaaacccatccctt 861

                                                
Query: 665 attttcatctgccattcactctcgcctttccttctgg 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 862 attttcatctgccattcactctcgcctttccttctgg 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1098
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1088
Effective search space:   751808
Effective search space used:   751808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)