BAC Information

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BAC

Clone NameMSMg01-501N23
Chromosome4 (Build37)
Map Location 119,251,259 - 119,251,655
singlet/doubletsinglet
Overlap geneFoxj3
Upstream geneEbna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398
Downstream geneGuca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501N23.T7 (MSMg01no501_n23.b1)MSMg01-501N23.TJ (MSMg01no501_n23.g1)
ACCAG577364AG577365
length736668
length of high quality
(start - end)		---498 (60 - 557)
definitionCHROMAT_FILE: MSMg01no501_n23.b1 PHD_FILE: MSMg01no501_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:46 2005CHROMAT_FILE: MSMg01no501_n23.g1 PHD_FILE: MSMg01no501_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTATTTTGGTCGCGGCGTGGGAGTGGTATTCTCAAGGNGGGGCGCAAG
TCTCTTTGTGTTGGCCTTCTTCTGCACCTAAAAAATTGCGTGGCGGTTAT
TACGACTTCACTATATTTTAGCAGGATCCCGCGGGAAATTCCCTTTTCTA
GTTGTTTCCTACCCATTATCCCCACGTTTTTACTTCCTAAGAACCTCCTG
GATCTCCAACTTTGCCATTTTCCCAAGCATTTCCCTTAATAAGAACTAAC
ATGCTTCCCACAACGGAAAGCTTCAAAAACTTCGGGGGTTTTTTGGAAAA
CCAAATTTTTTGAAAAAAATATCCGGGGACAAAAAAAATGGTTTTAAAAG
AGACCCATTTTTCCCCAAAAAAGAAAACCCCCCACCCTTATTAAGGGGCC
CCATGAACGGGCCTTTTTTTGGAAAAAACACCAAAGGGAGTGGGGTAAAA
CCCCCCCGCGGGTGGGGTGGGGGGGGAGAAATTTTTTTTATAAACGCCCC
CCCCCTCCGGGGGTGGAAAAAAGCCCCCCTATAGTGGGCGTTTCTCTCCT
CAAAAAAATGGGGTGGTTTCTGTTGGGAGATAAATTCGGGGGGGTGGGGG
GGGTGTTTTATCCTACGAAGTATTATTTATAATGTTGTTTTTAAAAAAAA
AGAAGGGGGGGGGGGGGGGGGTAAACCAAAAATTCGCTGTGGGTGGAGAA
AAAAATAATCTACCTCTTCTTTGTGAGGGGGGGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAAATTCACTACATAGACCAAGACCACACTGACCTCAAAGTC
ACAGAAATCTACCTGCCTCCAACCTCCCAGTGCTGGAATCAAAGGCATGT
TCTGCCACACCCAGCTTTGGTCCCCATAGAAATGTTCAGGTATAAATGTT
TCTAGGTCTACAAAAACGAAAATTAAAGTGATAAGGTAAATACTAGGCAT
CTAGTATTTTAAAATTAGTGAAAGGAAAAAATTTTAATGATTACTATTTA
TAATCCCTAAAGATACTGAAGTTCTGCTGGAGGCAAATGGTATCAGAACC
TTTCTGGGAATCTTTAGTTTTAGGAACAAAATTCTTTCCCACTCGCTTCC
ACTCCCAATCCACCCACTATGTCTTAATATATTAGCCACGTATCTTTCAG
GTGAGTATTTAATCACTATTTCTAAAGGAATTCCAAGCCATGATTTGAGA
TAATAATCACCAAGACATAACAACAGATTTACAATATATAAGACACTGAG
GACTANGTTGATGAGGAACATAATCAAAATTTATATATACTGTTCCTAGA
AATTGAAGCAAGTTCTTTAGCTGGGCTTTCATAGACTTTAAGATCATTAT
AATCTGGTTCATCCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_n23.g1 MSMg01no501_n23.g1 CHROMAT_FILE:
MSMg01no501_n23.g1 PHD_FILE: MSMg01no501_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:46 2005
         (498 letters)



>mm_chr4_119250812_119251709
          Length = 898

 Score =  565 bits (292), Expect = e-165
 Identities = 396/496 (79%), Gaps = 99/496 (19%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattcactacatagaccaagaccacactgacctcaaagtcacagaaatctacctgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aaattcactacatagaccaagaccacactgacctcaaagtcacagaaatctacctgcctc 785

                                                                       
Query: 61  caacctcccagtgctggaatcaaaggcatgttctgccacacccagctttggtccccatag 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 784 caacctcccagtgctggaatcaaaggcatgttctaccacacccagctttggtccccatag 725

                                                                       
Query: 121 aaatgttcaggtataaatgtttctaggtctacaaaaacgaaaattaaagtgataaggtaa 180
           ||||||||||||||||||||||||||||                                
Sbjct: 724 aaatgttcaggtataaatgtttctaggt-------------------------------- 697

                                                                       
Query: 181 atactaggcatctagtattttaaaattagtgaaaggaaaaaattttaatgattactattt 240
                                                                       
Sbjct: 697 ------------------------------------------------------------ 697

                                                                       
Query: 241 ataatccctaaagatactgaagttctgctggaggcaaatggtatcagaacctttctggga 300
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 -------ctaaagatactgaagttctgctggaggcaaatggtatcagaacctttctggga 644

                                                                       
Query: 301 atctttagttttaggaacaaaattctttcccactcgcttccactcccaatccacccacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atctttagttttaggaacaaaattctttcccactcgcttccactcccaatccacccacta 584

                                                                       
Query: 361 tgtcttaatatattagccacgtatctttcaggtgagtatttaatcactatttctaaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgtcttaatatattagccacgtatctttcaggtgagtatttaatcactatttctaaagga 524

                                                                       
Query: 421 attccaagccatgatttgagataataatcaccaagacataacaacagatttacaatatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 attccaagccatgatttgagataataatcaccaagacataacaacagatttacaatatat 464

                           
Query: 481 aagacactgaggacta 496
           ||||||||||||||||
Sbjct: 463 aagacactgaggacta 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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