CTCACTATTTCGAGAGGATCCGCGGAATTCCTGAGTTTGTATGCCTTGTG
TTTGTGTTCAGTGTTCATGTACATGATGATGCTGTGCAACTTAGAGATGA
TAAACCACAAAACAAGCCTGGTTCTCAATGTTATGTCTACTGATTAAAAG
ACACAATGCATACCACACAGCTAAGGAGACTAGATAATTTCAATAAAATC
TTTCAAAATTGTATTAGTGGCTTTTCTCAAATATTTATTAATTTTTCTGG
CCCTCAACGTGTAGATTAATTTTGGTCATTTATGCCACCTTGAGTTATTT
AGCATCAATTTAGAACTATTAGCATGTGGTCTTTGCCAATAGATAAAATT
TTTGATGGCAAATTGGTTAAAAAATAAATATTTCTAACCATTAATTAAAT
AATATTTTTGAATACTCAGCTAATTTCCTTCCCACTATCAATTTTATCAA
TTTGAAGACTGATTAAATTTTATTTTTTCAGCTGATTATTACTTCTCAAA
TTATTTAACTATGCTCCAGTAGTTCTCTAAAAACTCAACAACTACCATAA
AACATCCTTCCTTTACAGATATCCGACAACGCTGAAGACGTGATTAATGT
TATGTGTAAAGGCAGCGTTGGGATTTTAACTATCATTTTAGCATCAGGGT
GTGAACAAATGCTGAACCATAATTACCAGGATCA

CGAAGAAAAGGGGAGGCGGGNNGNTTCCCGCTTCCTACCCGCCNGNGAAA
NNNNNNNGTTACAGNGAACAGAAGGGGNNGNNANGGNGGNAGGCCGGGGG
GGGGGAGNGGGTTGGAACCCAAAAACAACGGGGGGAGAGGAGCGGGGCCC
GGGGCGACGGAACAGGGAGGGGGGCGCACCCCGCGGGCAGAGCGGAGGGA
GGAAACGAGACAACAAGAGCAAGCGAAAGAGGGAGGCGCAGAGGGGGATT
TTGTTAGACAACGGACGCGGAGCGACAGGTGAGCGCGCCGCGGCGACGGG
AAGCGCCACAAAGACACTTTTGTATTTAAAAACGAGAACGAAGGACGGAA
GAAGAACAGGGAGGAATGTGCCACCCGCCACGAGAGCGGGGGGGGGGCAA
CGCGGAGGAAGGGCAAGGAGAAACCCCCCCCCGGATGATATAGCCGGCCA
ACAACGATGAGGGAGAGGCCGCGACCCGGCCAAAAAACAGGCCGGCAGGC
GGCGCGTGGGACGGGCAAACAAGGCGGCCGGCGAAAAGGCAGCACGAGAC
GAACAAGCGGCCGCAGAACCCCACACGACCGGGATAGGGCCCCAGCCGGC
CCCCAGTAGACGAAGAGACACAAGCCGAGCCCAAGTCGACGAAACGCCCG
CGGAATACAACCCCGCCGCGACAAGAACAAGCAGCCACGGGAGACCGATA
ATTGACTCCCCAGGATCGGGCAGGGAAAAGGGCGCCAGAAAAGCAAGAGC
GATGGACCGCAAGAGGCCGGCCCATACCGGAAAAAGGCAGGATATGACCA
CAATGTGGGACCACCCGCACCCGCC

Query= MSMg01no502_m15.b1 MSMg01no502_m15.b1 CHROMAT_FILE:
MSMg01no502_m15.b1 PHD_FILE: MSMg01no502_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:54 2005
         (667 letters)



>mm_chr4_31591916_31592982
          Length = 1067

 Score = 1164 bits (602), Expect = 0.0
 Identities = 647/662 (97%), Gaps = 1/662 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcctgagt-ttgtatgccttgtgtttgtgttcagtgttcatgtacatgatgatgc 65
           |||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 ggaattcctgagtcatgtatgccttgtgtttatgttcagtgttcatgtacatgatgatgc 265

                                                                       
Query: 66  tgtgcaacttagagatgataaaccacaaaacaagcctggttctcaatgttatgtctactg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtgcaacttagagatgataaaccacaaaacaagcctggttctcaatgttatgtctactg 325

                                                                       
Query: 126 attaaaagacacaatgcataccacacagctaaggagactagataatttcaataaaatctt 185
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 326 attaaaatacacaatgcataccacacagctaaggagactagataatttcaataaaacctt 385

                                                                       
Query: 186 tcaaaattgtattagtggcttttctcaaatatttattaatttttctggccctcaacgtgt 245
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcaaaattgtattagtggtttttctcaaatatttattaatttttctggccctcaacgtgt 445

                                                                       
Query: 246 agattaattttggtcatttatgccaccttgagttatttagcatcaatttagaactattag 305
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 446 agattaattttggtcatttatgccaccttgagttatttagcagcaatttagaactattag 505

                                                                       
Query: 306 catgtggtctttgccaatagataaaatttttgatggcaaattggttaaaaaataaatatt 365
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 506 catgtggtctttgccaatagataaaatgtctgatggcaaattggttaaaaaataaatatt 565

                                                                       
Query: 366 tctaaccattaattaaataatatttttgaatactcagctaatttccttcccactatcaat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 566 tctaaccattaattaaataatatttttgaatactcagctaatttccttcccactatcaac 625

                                                                       
Query: 426 tttatcaatttgaagactgattaaattttattttttcagctgattattacttctcaaatt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttatcaatttgaagactgattaaattttattttttcagctgattattacttctcaaatt 685

                                                                       
Query: 486 atttaactatgctccagtagttctctaaaaactcaacaactaccataaaacatccttcct 545
           | ||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 686 acttaactatgcttcggtagttctctaaaatctcaacaactaccataaaacatccttcct 745

                                                                       
Query: 546 ttacagatatccgacaacgctgaagacgtgattaatgttatgtgtaaaggcagcgttggg 605
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttacagatattcgacaacgctgaagacgtgattaatgttatgtgtaaaggcagcgttggg 805

                                                                       
Query: 606 attttaactatcattttagcatcagggtgtgaacaaatgctgaaccataattaccaggat 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 attttaactatcattttagcatcagggtgtgaacaaatgctgaaccataattaccaggat 865

             
Query: 666 ca 667
           ||
Sbjct: 866 ca 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)