Query= MSMg01no502_p20.b1 MSMg01no502_p20.b1 CHROMAT_FILE:
MSMg01no502_p20.b1 PHD_FILE: MSMg01no502_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:09 2005
(556 letters)
>mm_chr4_124157119_124158074
Length = 956
Score = 938 bits (485), Expect = 0.0
Identities = 542/581 (93%), Gaps = 34/581 (5%)
Strand = Plus / Minus
Query: 1 cataaggagagatctattttaaacttggtcgaaaaggcttttgcagaaagtggtgggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cataaggagagatctattttaaacttggtcgaaaaggcttttgcagaaagtggtgggaag 540
Query: 61 agagttcccaaggagaagcaggtgttctcacagcaggtcctgcacctgagcagggagccc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 539 agagttcccaaggagaagcaggtgttctcacagcaggccctgcacctgagcagggagccc 480
Query: 121 aggg------------------------ccccgctcaggcctaggagcctgggttgaccc 156
|||| ||||||||||||||||||||||||||||||||
Sbjct: 479 agggccccccccccccccccccccccccccccgctcaggcctaggagcctgggttgaccc 420
Query: 157 cctctggctacttttagcttgagtggctcaactgctgaggtcaggtgccccccaggacag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cctctggctacttttagcttgagtggctcaactgctgaggtcaggtgccccccaggacag 360
Query: 217 ggattcaagaacaaacagtgttcttgggagatgagtttttgtg-tgtgtgtgctgtgtgt 275
||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 359 ggattcaagaacaaacagtgttcttgggagatgag-------gcagggtgtgctgtgtgt 307
Query: 276 gacgatgtgggatgctaagtggccaccccaggcttcagcaagccagcagctaccactata 335
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaagatgtgggatgctaagtggccaccccaggcttcagcaagccagcagctaccactata 247
Query: 336 ggcagctgctgctttgccctaccaggcaactcggggatactgctgcctataaatgatgta 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggcagctgctgctttgccctaccaggcaactcggggatactgctgcctataaatgatgta 187
Query: 396 ttctagagctaggcccacaaagccaaaggatctgggctgctgtcacacccatcccaaacc 455
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 186 ttctagagctaggcccacaaagccaaaggatc--ggctgctgtcacacccatcccaaacc 129
Query: 456 tttgatggaggatgctcctcatgggtttaactcttggtttccccttgatggtgtgaagtg 515
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 128 tttgatggaggatgctcctcatgggtttgactcttggtttccccttgatggtgtgaagtg 69
Query: 516 gactgcagcagggagcaggtgggggagaagcttggtctccc 556
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gactgcagcagggagcaggtgggggagaagcttggtctccc 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_p20.g1 MSMg01no502_p20.g1 CHROMAT_FILE:
MSMg01no502_p20.g1 PHD_FILE: MSMg01no502_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:09 2005
(566 letters)
>mm_chr4_124075881_124076846
Length = 966
Score = 1064 bits (550), Expect = 0.0
Identities = 562/566 (99%)
Strand = Plus / Plus
Query: 1 taagacacagtgaaattcgtttctggctcacaatcctgccagccacgtgagttgcagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagacacagtgaaattcgtttctggctcacaatcctgccagccacgtgagttgcagata 260
Query: 61 ccacttcctgtcgtaaggctgtttcctcctctgcaaacaagaattccctcccaatggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacttcctgtcgtaaggctgtttcctcctctgcaaacaagaattccctcccaatggaaa 320
Query: 121 tacatactattaagagcaagtgacaaagtatttaacagccaactctcaaaaaggacgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatactattaagagcaagtgacaaagtatttaacagccaactctcaaaaaggacgatt 380
Query: 181 ctcaggccagcgagaaggctcaacgggcaacagcttctgccgggcaagcctggctacctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaggccagcgagaaggctcaacgggcaacagcttctgccgggcaagcctggctacctg 440
Query: 241 agatctattttataaatcagtgcaagggtggagaggagagaattgattccaccgggtcat 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatctatcccagaaatcagtgcaagggtggagaggagagaattgattccaccgggtcat 500
Query: 301 tctctgcctctcacatgtgcaccgtgacacgtgtgtctacggactcgtacacacacatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctctgcctctcacatgtgcaccgtgacacgtgtgtctacggactcgtacacacacatac 560
Query: 361 acaatcatcctcataataaaagtttaaagaaaataatgctcacatctcaaagcaatgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaatcatcctcataataaaagtttaaagaaaataatgctcacatctcaaagcaatgttt 620
Query: 421 actgcttcctacaatctgaagccttccacctcagctgatgtcaaggcaaaaggacaaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgcttcctacaatctgaagccttccacctcagctgatgtcaaggcaaaaggacaaggt 680
Query: 481 tccatctctgtgccaccggcttcttgggtatgtgggtagcgcgctgctgtatagcattct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccatctctgtgccaccggcttcttgggtatgtgggtagcgcgctgctgtatagcattct 740
Query: 541 tgccattcaaaccaaaccgatacaat 566
||||||||||||||||||||||||||
Sbjct: 741 tgccattcaaaccaaaccgatacaat 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
