CTTTTTATCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCG
AGGATCCGCGGAATTCCAGAACATTCCGGGTTATACAGAGAAACCCTGTC
TCGAAAAAAAAAAAGAACTTCTAGCTCCTCCTGCACCATGCCTGCCTGGA
AGCTGCCATGCTCCCACGTTGATTGTAATGGACTGAACCTCTGAATCTGT
AAGCCATCCCCAATTAAATGAATTTTATAAGACTTGCCTTGGTCATAGTG
TCTGTTCACAGCAGTAAAACTCTAAGACTGTATGTCTGTGTGTGTGTGTG
TATATAGTTTTCTACACTCCAGTTGTTATTCCCCTTCCAGTTTAATCTCC
AACAGTTCCTTATGTAACTCCTTCTCCCTCATGTCTTGAAGAGGATGTCC
TTACCACCCACCACCATCCTGCCAGGTCTTCTCACTCCCTGGGGCCTCAA
TTCTTAGCCCAGACAAGGCTAAGCATATGGGTCTTTGGTAGAGTGCATGT
TTCACAAGACCTAGATTCAATACTCAGAAGCAAATGGGTAAAACAAAGAA
CAATTGGAAGGTAAACATGAGTATGAGGAACCTCAGTGTTGCACAGATGG
ACATATCTTTCCCAGTATGGAGGGTTTCTGCTTCATATGGTTCACAGCGA
GACAAGACAAATGGTGCTTTTTCTCCCTCCACAGCCCACTCAACACCATG
CAGGAAGTTCTGTGCTAGCCAACCTCACTGG

CCTTTTTTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACCTGCGT
ACAAGGCTTGTTTACTAGTTAGGCACAGCAGAGGCCCACGCCATCTTATA
ATGGCGATTGCTCGTGGCACACACGGCTCTCCTCAGAGATTACTGGCGGC
ACACATGCGATTGCGTGCAGCACGTACCAGCTCTCCACACAAGTGAGCCT
ATTTATTTTTGTGAATCTTTGTTTGAAATTGATTATTTTTGGAGGCGACC
TCAGCATCAGCAGCAGCAGTCGCCATCTTGGTTCCGGGACTCCGCAGGAC
CTAGGAAATTAGTCTGAACAGGTTAGAGGGTGCACCAGAGAACCGAACAG
CTTCTGGGACGGGCGGAAGCACAGAGCCGCTGAGGCAGCAGCCTGGGCGG
GCCGCAGACAACCGGCCACCATCCGGACCAGAGGACAGGTGTCCGCCTGG
CTTGGGAGGCGACCTCAGCCTCAGCAGCAGCAGTCGCCATCTTGGTTCCG
GGACTCAGCAGAATTTAGGAAATTAGTCTGAACAGGTTAGAGGGTGCGCC
AGAGAACCGGACAGCTTCTGGGACGGGCAGAAGCACAGAGCCGCTGATGC
AGCAGCCTGGGCGGGCCGCAGATAACCGGCCACCATCCAGACCATAGGAC
AGGTGTCCGCCTGGTTCGGGAGACAGCCT

Query= MSMg01no503_f17.b1 MSMg01no503_f17.b1 CHROMAT_FILE:
MSMg01no503_f17.b1 PHD_FILE: MSMg01no503_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:36 2005
         (493 letters)



>mm_chr4_18003027_18003919
          Length = 893

 Score =  532 bits (275), Expect = e-155
 Identities = 436/579 (75%), Gaps = 138/579 (23%)
 Strand = Plus / Plus

                                                                       
Query: 26  aaaaaaaaaaagaacttctagctcctcctgcaccatgcctgcctggaagctgccatgctc 85
           |||||||||||||||| |||||||||||||||||||||||||||||              
Sbjct: 142 aaaaaaaaaaagaactcctagctcctcctgcaccatgcctgcctgg-------------- 187

                                                                       
Query: 86  ccacgttgattgtaatggactgaacctctgaatctgtaagccatccccaattaaatgaat 145
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ------------taatggactgaacctctgaatctgtaagccatccccaattaaatgaat 235

                                                                       
Query: 146 tttataagacttgccttggtcatagtgtctgttcacagcagtaaaactctaagactgtat 205
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 236 tttataagacgtgccttggtcatagtgtctgttcacagcagtaaaaccctaagactgtat 295

                                                                       
Query: 206 gtctgt------------------------------------------------------ 211
           || |||                                                      
Sbjct: 296 gtatgtatgtatgtatgtatgtatgtatatatatatatatatatatatatatatatgtgt 355

                                                                       
Query: 212 ----------------------------gtgtgtgtgtgtatata--------------- 228
                                       |||||||||||||||||               
Sbjct: 356 gtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtatatatatatatgtatatat 415

                                                                       
Query: 229 --------------gttttctacactccagttgttattccccttccagtttaatctccaa 274
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atatataaataatagttttctacactccagttgttattccccttccagtttaatctccaa 475

                                                                       
Query: 275 cagttccttatgtaactccttctccctcatgtcttgaagaggatgtccttaccacccacc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cagttccttatgtaactccttctccctcatgtcttgaagaggatgtccttaccacccacc 535

                                                                       
Query: 335 accatcctgccaggtcttctcactccctggggcctcaattcttagcccagacaaggctaa 394
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 536 accatcctgccaggtcttctcactccctggg-cctcaattcttagcccagacatggctaa 594

                                                                       
Query: 395 gcatatgggtctttggtagagtgcatgtttcacaagacctagattcaatactcagaagca 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcatatgggtctttggtagagtgcatgtttcacaagacctagattcaatactcagaagca 654

                                                  
Query: 455 aatgggtaaaacaaagaacaattggaaggtaaacatgag 493
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatgggtaaaacaaagaacaattggaaggtaaacatgag 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)