Query= MSMg01no503_f19.b1 MSMg01no503_f19.b1 CHROMAT_FILE:
MSMg01no503_f19.b1 PHD_FILE: MSMg01no503_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:37 2005
(567 letters)
>mm_chr4_19601244_19602208
Length = 965
Score = 1002 bits (518), Expect = 0.0
Identities = 551/564 (97%), Gaps = 6/564 (1%)
Strand = Plus / Plus
Query: 6 gaattcattaattattcatgtgccattaatgactgcaactggtataacaaacacagaact 65
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 206 gaattcattaattaaacatgtgccattaatgattgcaactggtataacaaacacagaact 265
Query: 66 gtacattttcagggtaaattactgagtaccaagcagcaaaaacaacatgttacagtccct 125
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 266 gtacattttcagggtaaattactgagtaccaagcagcaaaa----catgtcacagtccct 321
Query: 126 tctataaccaagtcactgtaaccattctggatctgaggtgacaaaggaaaagaccctgtg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctataaccaagtcactgtaaccattctggatctgaggtgacaaaggaaaagaccctgtg 381
Query: 186 tcatacacatgagtcattaagatgagaaagaatacaacataagcttctattctactgaga 245
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcatacacatgaatcattaagatgagaaagaatacaacataagcttctattctactgaga 441
Query: 246 gcgattagacaaacaaaccaatgacatacaaagtgaaagtgacttgtcagaggtgaaaa- 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 442 gcgattagacaaacaaaccaatgacatacaaagtgaaagtgacttgtcagaggtgaagac 501
Query: 305 tcagaaataattacccctattaatatgtaaagaataacaaaaaagattata-gctaacat 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 502 tcagaaataattacccctattaatatgtaaagaataacaaaaaagattataagctaacat 561
Query: 364 ttgttaaaaagataacagagtgcaacaatgttcggcattatgtctcaagtgctactatga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 562 ttgttaaaaagataacagagtgcaacaatgttcggcattatgtctcaagtgcttctatga 621
Query: 424 gggtctccatgaagctcattcccatccaagacgttccaattgctctaagttcaccaccaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gggtctccatgaagctcattcccatccaagacgttccaattgctctaagttcaccaccaa 681
Query: 484 gggaaactccccactcagaagctttcactccaaataaaagttatcctttggatccataca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gggaaactccccactcagaagctttcactccaaataaaagttatcctttggatccataca 741
Query: 544 catcctatctatccacacattgta 567
||||||||||||||||||||||||
Sbjct: 742 catcctatctatccacacattgta 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 965
Length adjustment: 10
Effective length of query: 557
Effective length of database: 955
Effective search space: 531935
Effective search space used: 531935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_f19.g1 MSMg01no503_f19.g1 CHROMAT_FILE:
MSMg01no503_f19.g1 PHD_FILE: MSMg01no503_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:37 2005
(525 letters)
>mm_chr4_19786566_19787490
Length = 925
Score = 868 bits (449), Expect = 0.0
Identities = 455/457 (99%)
Strand = Plus / Minus
Query: 69 tgcctttctcagagcactgtgtctttgcctaatagctacaggcacagctcataacaatta 128
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tgcctttctcggagcactgtgtctttgcctaatagctacaggcacagctcataacaatta 866
Query: 129 ttttttgttttataatgttggtcttgctcatctaaccacgttctttgagaaaagagaatt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttttttgttttataatgttggtcttgctcatctaaccacgttctttgagaaaagagaatt 806
Query: 189 tagcttctagatgactgctcaataattcagtgtttggcccacagcctggtatctggtagt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagcttctagatgactgctcaataattcagtgtttggcccacagcctggtatctggtagt 746
Query: 249 atttaatatatatttttaatgaacaatgaacagattatttccactataaagtttaattta 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atttaatatatatttttaatgaacaatgaacagattatttccactataaagtttaattta 686
Query: 309 aatcatggaagaaagggtaaaagtatagctaggcaagggacctctacatttctattggca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatcatggaagaaagggtaaaagtatagctaggcaagggacctctacatttctattggca 626
Query: 369 tacagacatcctgctgcccacatgtaggaaagacaaaggaattgaaacccaaataccatc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 tacagacatcctgctgcccacatgtaggaaagacaaaggaattgaaacccaaagaccatc 566
Query: 429 aatacctagacagtaatacatcctcaggaccccaggatggtttgcccccaaaccttgctg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatacctagacagtaatacatcctcaggaccccaggatggtttgcccccaaaccttgctg 506
Query: 489 ttttctttactgatgaataactgagtgttactgaagt 525
|||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttctttactgatgaataactgagtgttactgaagt 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
