Query= MSMg01no503_i19.b1 MSMg01no503_i19.b1 CHROMAT_FILE:
MSMg01no503_i19.b1 PHD_FILE: MSMg01no503_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:51 2005
(593 letters)
>mm_chr4_129124073_129125065
Length = 993
Score = 1050 bits (543), Expect = 0.0
Identities = 582/595 (97%), Gaps = 2/595 (0%)
Strand = Plus / Plus
Query: 1 tcagcatagtttc-cactattggcttattcaa-catcagcagaaaaattacatgtacgtg 58
|||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 199 tcagcatagtgacacactattggcttattcaaacatcagcagaaaaattacatgtacgtg 258
Query: 59 cagggtgtcagagttctgtgagttgttgactcagttcacatagccctgttatgtcctcac 118
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 259 caggctgtcagagttctgtgagttgttgactcagttcagatagccctgttatgtcctcac 318
Query: 119 attcctctttatcttatggtcaagctgttccccggaatgttttaactacggggcataccc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attcctctttatcttatggtcaagctgttccccggaatgttttaactacggggcataccc 378
Query: 179 gggtttggtttttctttttttctcagtcccaggcagcctctaggctcacaaacaaccagc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggtttggtttttctttttttctcagtcccaggcagcctctaggctcacaaacaaccagc 438
Query: 239 agtttctgagtactttatatgacttactggtcttgaaatttcatctttcttttttttgtt 298
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 agtttctgagtactttatatgacttacaggtcttgaaatttcatctttcttttttttgtt 498
Query: 299 ggtttttttttgttgttgttgttttggttttggttttttcaagacagggtttctctgtgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggtttttttttgttgttgttgttttggttttggttttttcaagacagggtttctctgtgt 558
Query: 359 tgccctggctgtcctggaactcactctgcagaccaggctgcccttgaactcagaaatcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgccctggctgtcctggaactcactctgcagaccaggctgcccttgaactcagaaatcca 618
Query: 419 cctgcctctgcctcccaagtgctgggattaaaggtgtgcgccaccaacgcccggctaagt 478
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |
Sbjct: 619 cctgcctctgcctcccaagtgctgggattaatggcgcgcgccaccaacgcccggctaaat 678
Query: 479 ttcacctttctttcagaatcacttgaaacccttatctacaaagccccccagcttgctatt 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 679 ttcacctttctttcagaatcacttgaaacccttatctacaaagtcccccagcttgctatt 738
Query: 539 tcctctctgtcctgccttgactatagttggttcagagacataagctcatctctca 593
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 739 tcctctctgtcctgccttgactatagttcgttcagagacataagctcatctctca 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_i19.g1 MSMg01no503_i19.g1 CHROMAT_FILE:
MSMg01no503_i19.g1 PHD_FILE: MSMg01no503_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:51 2005
(544 letters)
>mm_chr4_129252246_129253191
Length = 946
Score = 1044 bits (540), Expect = 0.0
Identities = 544/546 (99%), Gaps = 2/546 (0%)
Strand = Plus / Minus
Query: 1 atgcactgcttgtcagcaccgtgccccccaggcgggtgctgaagctgaggtgagctgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 atgcactgcttgtcagcaccgtgccccccaggcgggtgctgaagctgaggtgagctgtaa 687
Query: 61 aatgctaaggtttctaagtgaggacagcagggcggtatatcaggtctggagacacatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aatgctaaggtttctaagtgaggacagcagggcggtatatcaggtctggagacacatctg 627
Query: 121 ccggctctgtcattctcagggttgggttgtttttttttttttccttctgtgtgactctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccggctctgtcattctcagggttgggttgtttttttttttttccttctgtgtgactctca 567
Query: 181 gcctttgtttctgtgtttctctctttgtctgactttccaactcagacttcct--cccccc 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 566 gcctttgtttctgtgtttctctctttgtctgactttccaactcagacttcctcccccccc 507
Query: 239 ccccccccgccatttcctgttcccccttccctctgcagctgaggtgcacacagcttcagc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccccccccgccatttcctgttcccccttccctctgcagctgaggtgcacacagcttcagc 447
Query: 299 tcctacctcacaaaccccaacaatgctctgtgggctcccctccccctgcctgctcactca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcctacctcacaaaccccaacaatgctctgtgggctcccctccccctgcctgctcactca 387
Query: 359 gcgtagctcaagaggtgacacatttacactttctttccagtgaggtcaggacccattctt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcgtagctcaagaggtgacacatttacactttctttccagtgaggtcaggacccattctt 327
Query: 419 ggccctgataggggccatttggggttcctcacatcactggtggcctggccctctgcctgt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggccctgataggggccatttggggttcctcacatcactggtggcctggccctctgcctgt 267
Query: 479 gagggacacaatcctcatttttgcctgctggcagcttgttgtggagttcttaaactcctg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagggacacaatcctcatttttgcctgctggcagcttgttgtggagttcttaaactcctg 207
Query: 539 ctgatg 544
||||||
Sbjct: 206 ctgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 946
Length adjustment: 10
Effective length of query: 534
Effective length of database: 936
Effective search space: 499824
Effective search space used: 499824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
