BAC Information

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BAC

Clone NameMSMg01-503L02
Chromosome4 (Build37)
Map Location 31,156,795 - 31,157,118
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185, LOC619906, LOC100040864
Downstream geneLOC100040891, Map3k7, LOC665218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503L02.T7 (MSMg01no503_l02.b1)MSMg01-503L02.TJ (MSMg01no503_l02.g1)
ACCAG578749AG578750
length987751
length of high quality
(start - end)
---324 (73 - 396)
definitionCHROMAT_FILE: MSMg01no503_l02.b1 PHD_FILE: MSMg01no503_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:03 2005CHROMAT_FILE: MSMg01no503_l02.g1 PHD_FILE: MSMg01no503_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTGTTCCCCCTAAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTCCCAGCGATCCGCGGNAATTCTCGAGGGCCATTAACCGCACGCAGC
TGGTGTGGTGGTTTTTGTAGCCAGGGTGGAAGGAGGCAAGGAGGATAGGG
GGTATTCTTCCCGAGGCCCAAACTTATTCAACCCTGTTACACACATCTCG
ACAATGCCCCCGCTTTTCTATATCTTCCTCACCACATCTTATCCCCTTTT
CCACCTCACCCACTCATTCCTTTCTTCTCTATTCGCCCGTCTTCACTCCA
TTCCTCCCCCCGTCTACTCTCCATCTTTCCATCTTCCCCTATGCTTAATT
CCCCCACTCCGACCCCCTTGTTTTCCCCCCCCCTCCTTTCCCCCTTNTTT
TTGTACTCTCTCTTTTCTTCTCTTCCCACCCCTTTTCCCCGCATCTCTTT
TCCCTCCCCCTCTTTTGTTTTCTTCCCCTGCGCCTACTTCTTACCTGTTA
CCCCCATCTTCCTCTTTTGTCCTCTCCTCCTTCCTCCCCCTCTTATCCCC
CTATTCTTTTCTCTCCCTTCTTTTCCCCCCCCCTTTATTACCGCCACTAT
CATTTCTTCCTCCTCTCCTCTCTCAATCCCCNTTTTTCCGCTTTCTTTAT
CCTCTCTCCCTCCCTTACCTCCTCCCTCCCACTTCCCCCCATCCTTTTTT
TTCCTTTCTTCACCCACCCTTCTCTCTTTTTTCTTTCCCCCTATTCTCCC
CCACTTTCTCTCCCTCCCCCCCCCCTTTTTTTTAATTGTTCCCCTTACCT
TTTCCCCGCCCCTTTTTTTTTCTTCTCCCCCCTTCCCCTTTTCTTTTTTT
CCTTTCTCTCCTCTCCCCCTATTATTTTCCACACTCTCCTCGCACCCCTT
TCTCTTATCCCTTCCCCCACCGCTTATGTTTCCTTCCTCTCCCACTCCTT
CCTTTTTTATTCTTTCTCCACCCCCCTTCCTCCAACC
TGCTGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGAGACTATATGCAACCATATTTTAGG
CTAACCAAATTATCACTACTTAAGCATCACCACAGAGCTAATATTAATCC
TCAACCAGATATGTCAGCCTTAAAAATGTATACCTTCTCCTGGGGAGATT
GTTCTTATAATTAAATAAATGCTAGAGTCATGTAACTAATGCTATAACAT
TTTGAAACACAGACAGCTTTGACGCATATCTCTTCCACATTCCTGTCATT
GAGAATCAAGCAGGCCTATTTTCCTTCTCGTAGGAATAATGCTGAATGAA
GTGGGAAATGGGGAAAATTGGAGAATCTTTAGTGGGGAAGTGGTGAGGTA
GAGCAATATTGAGGGAGAAAACATTACAAAGGATATTTGAAGCAGTTTGT
ATAGAATCATCCTTTTTTACTTACCTTAAGTTACATCTTAACGTTGTGTG
TGCGTGTTTTTTGCCAGCGCGTGCCCTATCTTTTTTCCTCCTTTTTTTTC
CCCTTTTTCTCCCCTTACCTTTTTTTTTCTCTTTTCCCTTTTTTTCCGCC
TTTTTCTCCTACCTCTCAACCCTATAATTTTTTTTTTTTCCCTTTTTCCC
TCCCCACACTCTTTTACTTTTATTGACGTGTTTGCAATACACTCTCTACT
GTTTTTTTTTTTACCGCTTTTATCATTTTCTTTTATATTCCTTATTCTGG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_l02.g1 MSMg01no503_l02.g1 CHROMAT_FILE:
MSMg01no503_l02.g1 PHD_FILE: MSMg01no503_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:03 2005
         (324 letters)



>mm_chr4_31156595_31157318
          Length = 724

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagactatatgcaaccatattttaggctaaccaaattatcactacttaagcatcacca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagactatatgcaaccatatttcaggctaaccaaattatcactacttaagcatcacca 260

                                                                       
Query: 61  cagagctaatattaatcctcaaccagatatgtcagccttaaaaatgtataccttctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagctaatattaatcctcaaccagatatgtcagccttaaaaatgtataccttctcctg 320

                                                                       
Query: 121 gggagattgttcttataattaaataaatgctagagtcatgtaactaatgctataacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gggagattgttcttataattaaataaatgctagagtcatgtaactaatgctatgacattt 380

                                                                       
Query: 181 tgaaacacagacagctttgacgcatatctcttccacattcctgtcattgagaatcaagca 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaacacagacagctttgacgcagatctcttccacattcctgtcattgagaatcaagca 440

                                                                       
Query: 241 ggcctattttccttctcgtaggaataatgctgaatgaagtgggaaatggggaaaattgga 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcctattttccttctcataggaataatgctgaatgaagtgggaaatggggaaaattgga 500

                                   
Query: 301 gaatctttagtggggaagtggtga 324
           ||||||||||||||||||||||||
Sbjct: 501 gaatctttagtggggaagtggtga 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)