Query= MSMg01no504_a07.b1 MSMg01no504_a07.b1 CHROMAT_FILE:
MSMg01no504_a07.b1 PHD_FILE: MSMg01no504_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:28 2005
(661 letters)
>mm_chr4_151977681_151978742
Length = 1062
Score = 1191 bits (616), Expect = 0.0
Identities = 648/660 (98%), Gaps = 5/660 (0%)
Strand = Plus / Minus
Query: 5 gaattctca-attttcgtgaggtcagagagggagacactggcctagtcctaagggccgtg 63
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattctcagattt--gtgaggtcagagagggagacactggcctagtcctaagggccgtg 805
Query: 64 gatcactgagattggctctgattcccctcgctcccccc--cccaggtctgtttgcatggg 121
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 804 gatcactgagattggctctgattcccctcgctcccccccacccaggtctgtttgcatggg 745
Query: 122 tgcctccatcacccacccaaggctgcccatcagatgagatgggtgcatagctgcttatca 181
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgcctccatcacccacccaaggccgcccatcagatgagatgggtgcatagctgcttatca 685
Query: 182 aagaccatgaaaatgctttgaacattatacactttgaagctccagttagctttaaatcca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagaccatgaaaatgctttgaacattatacactttgaagctccagttagctttaaatcca 625
Query: 242 ggcctgcaaactatcttttcggaaaaataacccagatttgtcatggtgcattttgacgcg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggcctgcaaactatcttttcggaaaaataacccagatttgtcatggtgcattttgacgcg 565
Query: 302 tttgtatgctcccttgatccaaccctgggctaacaatagcttcccggcttcactttaaat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgtatgctcccttgatccaaccctgggctaacaatagcttcccggcttcactttaaat 505
Query: 362 aagaacattcacaacagagacaggaagaatggggggtaaaacgggcaattacttttttaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagaacattcacaacagagacaggaagaatggggggtaaaacgggcaattacttttttaa 445
Query: 422 aaaattcacaaacagtaagacaaatcctggctgctgataatggagccaagtttccgggca 481
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 aaaattcacaaacagtaagacgaatcccggctgctgataatggagccaagtttccgggca 385
Query: 482 catgacagattcacagcaaagcttcaccaacagcagctgataggccccaaactgagagag 541
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 catgacagattcacagcaaagcttcaccaacagcagctgacaggccccaaactgagagag 325
Query: 542 ggagaagagactgggggcacggtggctggggagcgggtgatgggacttaggggccttcac 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagaagagactgggggcacggtggctggggagcgggtgatgggacttaggggccttcac 265
Query: 602 ttgcaggtcactggctatataccctgctcctgggacagccagacctgagacacttctgag 661
||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgcaggccgctggctttataccctgctcctgggacagccagacctgagacacttctgag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space: 684852
Effective search space used: 684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_a07.g1 MSMg01no504_a07.g1 CHROMAT_FILE:
MSMg01no504_a07.g1 PHD_FILE: MSMg01no504_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:29 2005
(612 letters)
>mm_chr4_151800494_151801510
Length = 1017
Score = 1036 bits (536), Expect = 0.0
Identities = 594/616 (96%), Gaps = 5/616 (0%)
Strand = Plus / Plus
Query: 1 actctcggagaccaagatcaacagtgtctgtcaaaagggatggggacatagatggtagcc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 actctcggagaccaagatcaacagtgtctgtcgaaagggatggggacatagatggtagcc 260
Query: 61 ctgatagtggtcactggcacggctgaaaaaaaaaaaa-----aacaaacccatgtatcca 115
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 261 ctgatagtggtcactggcacggctgaaaaaaaaaaaaaaaacaacaaacctatgtatcca 320
Query: 116 gggagaaagaatgtgtgtgcaacgcttctgctggtgttattacaggggcataagtgggaa 175
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 321 gggagaaagaatgtgtgtgcaacgcttctgctggtggcactacaggggcataagtgggaa 380
Query: 176 ccagtgaacatcgaggctgcaggagagagagggagccatgtccggctctgtctgagatgg 235
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagtgagcatcgaggctgcaggagggagagggagccatgtccggctctgtctgagatgg 440
Query: 236 gcagtggtaggtactggtgaggcaggggtctgcaatccaggtccccatccttatcgcctg 295
||||||| |||||||||||||| |||||||||||||||||| |||| ||||| |||||||
Sbjct: 441 gcagtggcaggtactggtgaggtaggggtctgcaatccaggcccccgtccttgtcgcctg 500
Query: 296 gcctgagcaccatgtatgcccagatgctacatggtggcccctgaagtgtcactagatggt 355
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 gcctgagcaccatgtatgcccagatgctacacggtggcccctgaagtgtcactagatggt 560
Query: 356 gcaaattggaagttcctacttcagttgggtcagctgtactggtgagaccctgagactttc 415
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gcaagttggaagttcctacttcagttgggtcagctgtattggtgagaccctgagactttc 620
Query: 416 agttttctagaaaggaaccagcctagtgtttgcccaggagaaatcaggcttggagatgaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttttctagaaaggaaccagcctagtgtttgcccaggagaaatcaggcttggagatgaa 680
Query: 476 gaggtattgggtggccctaggggtgggctgagtggccctaggtgagggctggcccctctg 535
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggtattgggtggccctgggggtgggctgagtggccctaggtgagggctggcccctctg 740
Query: 536 ggggccagaggaagggcccactaaggataggggtttgagatgactgcaaagtcctcccac 595
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggggccaaaggaagggcccactaaggataggggtttgagatgactgcaaagtcctcccac 800
Query: 596 cctgggtcatctctcc 611
||||||||||||||||
Sbjct: 801 cctgggtcatctctcc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1017
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1007
Effective search space: 606214
Effective search space used: 606214
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
