TCCCTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGATTTTTTGTTTCCCTTTTTGAATCCTAATTTTAAAG
TATAAAAAAGACGGGTTGGACCATGGCACCCACTGATGGATTGCTTGTAA
TGGCTAAAATACAGAAATAAACTGAAAGTATAGTTTTAAATTATCAAATA
ATTTTTGTAGCCAATGTGATAGAACCAGGGTAGCACTGAAATGTATCTGG
ATGGTTCTATTAAGTGTTAAAAACCAAAATGGTGATTTTATATCAAATAA
GCAGGTAAACTGTGAATTATCAAATGCAGGCCTTTTTTGGATAAATTCTG
GATAGAAGTTTTGCTCACTTCTTTTCTAGCCTGTTCTTCTAATTTCCTTA
ATTAAAATCATATTTTAAAAGCAGATAAGCCCAACTTTTTTATAAAGACA
GAAAGTGATCTCTAACTTATATTCATAAAAATGCTTGTAGTTAAATTTCC
ACCACTCAATTTTGTCACCTCCACCTTCCTGTTATTTAATATTTATGAAG
CGGGCCCTTGAGTGTCCCAGGACTCTGGTGCCGCCCCTTGATTTGTACGG
TCTTACTGGAAACCTGTAAGGTGCATAGCAAGTATTTGTGCATGATGTCG
GCGTGCGCATCATACATCATTTTGAATTGCCAGACAGTTAAGGAAGAAAT
CATAAACACTTCATTTTTACTCCTAGATGGCTTAGN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTTTCCATGAGTTTGTTTCTGTTGTTGTT
GAAGTCCAGCTTTAACCTATGGTGGTTTGATACATGGGGTTATTTCAGTT
TTCTTGTATTATCGGGACTTGTTTTGTGAGCCAGTCTATGGTCAATTTTG
TAGAAGGTCCCATGAGGTGCTGAGAGGAAGGTATATTCTTTTGTATTTGG
GTGAAATGTTCTGTAGATATCTATTAGATCCATTTGATTCATAGTGTCTA
TTAGTTTCATTATTTCTCTGTTTAGATTCTGTCTGGATGACCTGTCCATT
GGTGAGAATGGGGCATTGAAGTCTTTCAATATTAATGTGTGATGTTCAAT
GTGTGATTTAAGCTTTAGTAATGTTTCTTTCATGAATGTGGATGCCCTTG
CATTTGTGGGATAGATATTCAGAATTGAGATGTCCTCTTGATGGATTTTT
CCTTTTTCGGAGACACATGAGTTCTAACAGTCACTGCCGTGTACTCCACA
CTGAAAATGGGGAGGTTGTTAATCTTCAGCTTCATTTCATAAGTCTGCTA
TCCACCTTCCATCTGAAGTTAATAGTAGGAAATGAGAAAAGATAATGCCC
TTAGGGAAGCCACCTTAAAATTACATAACATCACTGTTAAAGATGTAAAG
AAAGAAAACCTCATATATTAATTACCG

Query= MSMg01no504_l04.b1 MSMg01no504_l04.b1 CHROMAT_FILE:
MSMg01no504_l04.b1 PHD_FILE: MSMg01no504_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:22 2005
         (564 letters)



>mm_chr4_83553046_83554008
          Length = 963

 Score =  953 bits (493), Expect = 0.0
 Identities = 535/549 (97%), Gaps = 3/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  tttgtttccctttttgaatcctaattttaaagtataaaaaagacgggttggaccatggca 76
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 763 tttgtttccctttttgaatcctaattttaaagtataaaaaagacgggttggagcatggta 704

                                                                       
Query: 77  cccactgatggattgcttgtaatggctaaaatacagaaataaactgaaagtatagtttta 136
           ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||
Sbjct: 703 cccactgatggattgcttgaaatggctaaaatac-gaaataagctgaaagtatagtttta 645

                                                                       
Query: 137 aattatcaaataatttttgtagccaatgtgatagaaccagggtagcactgaaatgtatct 196
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 644 aattatcaaataatttttgtaaccaatgcgatagaaccagggtagcactgaaatgtatct 585

                                                                       
Query: 197 ggatggttctattaagtgttaaaaaccaaaatggtgattttatatcaaataagcaggtaa 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggatggttctattaagtgttaaaaaccaaaatggtgattttatatcaaataagcaggtaa 525

                                                                       
Query: 257 actgtgaattatcaaatgcaggcc-ttttttggataaattctggatagaagttttgctca 315
           |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||
Sbjct: 524 actgtgaattatcaaatgcaggcctttttttgg-caaattctggatagaagttttgctca 466

                                                                       
Query: 316 cttcttttctagcctgttcttctaatttccttaattaaaatcatattttaaaagcagata 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cttcttttctagcctgttcttctaatttccttaattaaaatcatattttaaaagcagata 406

                                                                       
Query: 376 agcccaacttttttataaagacagaaagtgatctctaacttatattcataaaaatgcttg 435
           ||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 405 agcccaactttcttataaagacaaaaagtgatctctaacttacattaataaaaatgcttg 346

                                                                       
Query: 436 tagttaaatttccaccactcaattttgtcacctccaccttcctgttatttaatatttatg 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tagttaaatttccaccactcaattttgtcacctccaccttcctgttatttaatatttatg 286

                                                                       
Query: 496 aagcgggcccttgagtgtcccaggactctggtgccgccccttgatttgtacggtcttact 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aagcgggcccttgagtgtcccaggactctggtgccgccccttgatttgtacggtcttact 226

                    
Query: 556 ggaaacctg 564
           |||||||||
Sbjct: 225 ggaaacctg 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space:   527962
Effective search space used:   527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)