MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-505H15
Chromosome	4 (Build37)
Map Location	11,932,877 - 11,933,466
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c
Downstream gene	Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592, OTTMUSG00000004461
Link	Open Mouse BAC browser

Click to get alignment info.

name	Plekhf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71801 MGI:1919051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310030N02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76947 MGI:1924197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs, 1 Protein

name	LOC546828 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546828
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	LOC666897 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Trp53inp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60599 MGI:1926609
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccne2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12448 MGI:1329034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ints8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72656 MGI:1919906
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dpy19l4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381510 MGI:2685869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm35a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207920 MGI:1917326
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC634834 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:634834
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins pseudo : _no_value

name	1110037F02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66185 MGI:1913435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039847 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039847
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	E130016E03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623474 MGI:2444973
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039862 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Gem (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14579 MGI:99844
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdh17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12557 MGI:1095414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppm2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381511 MGI:2685870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem67 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329795 MGI:1923928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C430048L16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77604 MGI:1924854
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC230010 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:230010
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 12 Proteins pseudo : _no_value

name	LOC623671 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 82 ESTs, 13 Proteins pseudo : _no_value

name	LOC100039958 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039958
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 99 ESTs, 8 Proteins pseudo : _no_value

name	Rbm12b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72397 MGI:1919647
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6720467C03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68099 MGI:1915349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545592 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545592
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 442 ESTs, 44 Proteins

name	OTTMUSG00000004461 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208820 MGI:3650048
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plekhf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560749 GeneID:71801 MGI:1919051
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pleckstrin homology domain containing, family F (with FYVE domain) member 2 transcript_id : NM_175175.3

name	2310030N02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94371431 GeneID:76947 MGI:1924197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs, 1 Protein product : RIKEN cDNA 2310030N02 gene, transcript variant 1 transcript_id : XM_131300.7

name	LOC546828 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252077 GeneID:546828
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : similar to SMT3 suppressor of mif two 3 homolog 2, transcript variant 1 transcript_id : XM_001473517.1

name	LOC546828 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252079 GeneID:546828
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to SMT3 suppressor of mif two 3 homolog 2, transcript variant 2 transcript_id : XM_001473542.1

name	Trp53inp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380186 GeneID:60599 MGI:1926609
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transformation related protein 53 inducible nuclear protein 1 transcript_id : NM_021897.2

name	Ccne2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:80861470 GeneID:12448 MGI:1329034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin E2 transcript_id : NM_001037134.1

name	Ccne2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90186268 GeneID:12448 MGI:1329034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin E2 transcript_id : NM_009830.3

name	Ints8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344002 GeneID:72656 MGI:1919906
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrator complex subunit 8 transcript_id : NM_178112.4

name	Dpy19l4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487096 GeneID:381510 MGI:2685869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dpy-19-like 4 (C. elegans) transcript_id : NM_001081201.1

name	Rbm35a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34610208 GeneID:207920 MGI:1917326
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 35A transcript_id : NM_194055.1

name	1110037F02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487144 GeneID:66185 MGI:1913435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110037F02 gene transcript_id : NM_001081183.1

name	LOC100039847 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252083 GeneID:100039847
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : similar to contactin associated protein 1 transcript_id : XM_001473658.1

name	E130016E03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130991 GeneID:623474 MGI:2444973
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130016E03 gene transcript_id : NM_001039556.2

name	Gem (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802514 GeneID:14579 MGI:99844
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP binding protein (gene overexpressed in skeletal muscle) transcript_id : NM_010276.2

name	Cdh17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374737 GeneID:12557 MGI:1095414
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin 17 transcript_id : NM_019753.3

name	Ppm2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347127 GeneID:381511 MGI:2685870
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 2C, magnesium dependent, catalytic subunit transcript_id : NM_001033453.2

name	Tmem67 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364059 GeneID:329795 MGI:1923928
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 67 transcript_id : NM_177861.3

name	C430048L16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90186271 GeneID:77604 MGI:1924854
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C430048L16 gene transcript_id : NM_198957.2

name	Rbm12b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859715 GeneID:72397 MGI:1919647
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 12B transcript_id : NM_028226.1

name	6720467C03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381527 GeneID:68099 MGI:1915349
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6720467C03 gene transcript_id : NM_026558.3

name	LOC545592 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371437 GeneID:545592
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 364 ESTs, 43 Proteins product : similar to heterogeneous nuclear ribonucleoprotein A3, transcript variant 12 transcript_id : XM_897632.2

name	LOC545592 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371438 GeneID:545592
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 394 ESTs, 41 Proteins product : similar to heterogeneous nuclear ribonucleoprotein A3, transcript variant 16 transcript_id : XM_988244.1

name	LOC545592 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252088 GeneID:545592
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 338 ESTs, 31 Proteins product : similar to heterogeneous nuclear ribonucleoprotein A3, transcript variant 13 transcript_id : XM_988106.2

name	OTTMUSG00000004461 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343438 GeneID:208820 MGI:3650048
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000004461 transcript_id : NM_173746.2

name	2310030N02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82801220 GeneID:76947 MGI:1924197
definition	codon_start : 1 product : hypothetical protein LOC76947 isoform 1 protein_id : XP_131300.5

name	LOC546828 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252078 GeneID:546828
definition	codon_start : 1 product : similar to SMT3 suppressor of mif two 3 homolog 2 isoform 1 protein_id : XP_001473567.1

name	LOC546828 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252080 GeneID:546828
definition	codon_start : 1 product : similar to SMT3 suppressor of mif two 3 homolog 2 isoform 2 protein_id : XP_001473592.1

name	Trp53inp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11230806 CCDS:CCDS17964.1 GeneID:60599 MGI:1926609
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006917 - induction of apoptosis [Evidence IDA]; GO:0006950 - response to stress [Evidence IDA] codon_start : 1 note : thymus expressed acidic protein; stress induced protein product : transformation related protein 53 inducible nuclear protein 1 protein_id : NP_068697.1

name	Ccne2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:80861471 CCDS:CCDS17965.1 GeneID:12448 MGI:1329034
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006270 - DNA replication initiation [Evidence IMP]; GO:0000074 - regulation of progression through cell cycle [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; cyclin E 2 product : cyclin E2 isoform 1 protein_id : NP_001032211.1

name	Ccne2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753312 CCDS:CCDS17966.1 GeneID:12448 MGI:1329034
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006270 - DNA replication initiation [Evidence IMP]; GO:0000074 - regulation of progression through cell cycle [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; cyclin E 2 product : cyclin E2 isoform 2 protein_id : NP_033960.1

name	Ints8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982254 CCDS:CCDS17967.1 GeneID:72656 MGI:1919906
definition	GO_component : GO:0032039 - integrator complex [Evidence ISS] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0016180 - snRNA processing [Evidence ISS] codon_start : 1 exception : mismatches in translation product : integrator complex subunit 8 protein_id : NP_835213.2

name	Dpy19l4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487097 GeneID:381510 MGI:2685869
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : dpy-19-like 4 protein_id : NP_001074670.1

name	Rbm35a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610209 GeneID:207920 MGI:1917326
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RNA binding motif protein 35A protein_id : NP_918944.1

name	1110037F02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487145 GeneID:66185 MGI:1913435
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC66185 protein_id : NP_001074652.1

name	LOC100039847 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252084 GeneID:100039847
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473708.1

name	E130016E03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88319960 CCDS:CCDS17970.1 GeneID:623474 MGI:2444973
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : fibrinogen silencer binding protein, homolog; novel protein similar to RAD54 homolog B product : RAD54 homolog B protein_id : NP_001034645.1

name	Gem (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753972 CCDS:CCDS17971.1 GeneID:14579 MGI:99844
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : GTP binding protein (gene overexpressed in skeletal muscle) protein_id : NP_034406.1

name	Cdh17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790073 CCDS:CCDS17972.1 GeneID:12557 MGI:1095414
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IDA]; GO:0005427 - proton-dependent oligopeptide transporter activity [Evidence IDA] GO_process : GO:0016339 - calcium-dependent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0006857 - oligopeptide transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : liver-intestine cadherin; BILL-cadherin; LI-cadherin product : cadherin 17 protein_id : NP_062727.1

name	Ppm2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794625 GeneID:381511 MGI:2685870
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA]; GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] [Evidence ISS]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA] [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 note : pyruvate dehydrogenase phosphatase isoenzyme 2; novel protein similar to protein phosphatase 2C, magnesium-dependent, catalytic subunit [Homo sapiens] (PPM2C) product : protein phosphatase 2C, magnesium dependent, catalytic subunit protein_id : NP_001028625.1

name	Tmem67 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244458 CCDS:CCDS17974.1 GeneID:329795 MGI:1923928
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transmembrane protein 67 protein_id : NP_808529.1

name	C430048L16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71067349 CCDS:CCDS17975.1 GeneID:77604 MGI:1924854
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC77604 protein_id : NP_945195.1

name	Rbm12b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859716 CCDS:CCDS17976.1 GeneID:72397 MGI:1919647
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RNA binding motif protein 12B protein_id : NP_082502.1

name	6720467C03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980897 GeneID:68099 MGI:1915349
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC68099 protein_id : NP_080834.2

name	LOC545592 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82801284 GeneID:545592
definition	codon_start : 1 product : similar to heterogeneous nuclear ribonucleoprotein A3, isoform 12 protein_id : XP_902725.1

name	LOC545592 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94371439 GeneID:545592
definition	codon_start : 1 product : similar to heterogeneous nuclear ribonucleoprotein A3, isoform 16 protein_id : XP_993338.1

name	LOC545592 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252089 GeneID:545592
definition	codon_start : 1 product : similar to heterogeneous nuclear ribonucleoprotein A3, isoform 13 protein_id : XP_993200.2

name	OTTMUSG00000004461 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424583 GeneID:208820 MGI:3650048
definition	codon_start : 1 product : hypothetical protein LOC208820 protein_id : NP_776107.1

name	LOC666897 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666897
definition	number : 1 pseudo : _no_value

name	LOC100039862 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039862
definition	number : 4 pseudo : _no_value

name	LOC100039862 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039862
definition	number : 3 pseudo : _no_value

name	LOC100039862 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039862
definition	number : 2 pseudo : _no_value

name	LOC100039862 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039862
definition	number : 1 pseudo : _no_value

name	LOC634834 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252082 GeneID:634834
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins product : similar to glycosyltransferase 8 domain containing 3 pseudo : _no_value transcript_id : XR_031318.1

name	LOC230010 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252086 GeneID:230010
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 12 Proteins product : similar to Poly A binding protein, cytoplasmic 4 pseudo : _no_value transcript_id : XR_031465.1

name	LOC623671 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252085 GeneID:623671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 82 ESTs, 13 Proteins product : similar to Poly A binding protein, cytoplasmic 4 pseudo : _no_value transcript_id : XR_031455.1

name	LOC100039958 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252087 GeneID:100039958
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 99 ESTs, 8 Proteins product : similar to ubc-like protein MMS2 pseudo : _no_value transcript_id : XR_031551.1

clone name	MSMg01-389H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548I18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-540I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523D20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-295O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280M21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-109K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045O09
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-505H15.T7 (MSMg01no505_h15.b1)	MSMg01-505H15.TJ (MSMg01no505_h15.g1)
ACC	AG580105	AG580106
length	773	767
length of high quality (start - end)	657 (71 - 727)	656 (80 - 735)
definition	CHROMAT_FILE: MSMg01no505_h15.b1 PHD_FILE: MSMg01no505_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:24 2005	CHROMAT_FILE: MSMg01no505_h15.g1 PHD_FILE: MSMg01no505_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:24 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC GGAATTCATGGCTCCCAAGAACCAATGTCAGGAATGTCGTCCTTTGACCT ACACTCACAATCTGTGGCAAACACACCCAACCCCTAACCCCTGCCCTGAC ACACACACACACATCATACACCCACACGATAAAAGTATTATTTAAACCCA GTGAACTCCAAGTAATTATAATCACAGGAGTGCCGTGGTTGGCATCGGGA TGACCTCTCAGGCAGATGTAAAGGATGGACAGTTCCATGTACAGTGTTGT GGGAAGAGATGGCTCTGATTGAGCCTCCTCCTCGCTTGCTGCCCTTTGGA AATAGTAAATCGGCCGGATGTTCCACACCCTCCACTAGGCTCTACCTCTT CTCCTTCCTCTTTCCCAAGCACCTCATCTAATATGCTACATTCTTTTGTT TCAAAAAAGGATTTATTTATTATGTAATGTTTATTATATAATAATATATA ATATATAGATTTAGTATATAGATTTATTAATTTATTATTATGAATATGTA CACACACACACACACACACACATTCTAATCTAGCTCTCTCTTTCTACAAA GTGGCTAATAGTCAACAATGGGAATTCTACCATGCTGCTTTTTTCTAAGC CTAGAGTCTTCCCACAGGCCTGATTCCTAAACATCACAGTTAGATACAGC TATCCTTTTTTACTAACTACCTACAATGGAGATTACATTCAACTGAGTTT CAGATAGCACTCGCTCCATTCAA	NNCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATG GCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAAT GCAAATCAAAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA TCAAAAATTCAGGTGGCAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGA ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTAGAA ATCAGTCTAGCAGTTCCTCATATTTATTGGACATAGCACTACCGGAGGAT CCCACAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAA GAAAGACACATGCTCCACTATGTTCATAGCAGGCTTATTTATAATAGCCA GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAA ATGTGGTACATTTACACAACAGAGTACTACTCAGCTATTAAAAAGAATGA ATTTATGAAATTCCTAGGCAAATGGTTGGGCCTGGAGGGCATCATCCTGA GTGAGGTAACCCAATCACAAAAGAACTCAAATGATATGTACTCACTGATA AGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAAATACAATT TGCTAAACACATGAAACTCAAGAAGAACAAAGACCTAAGTGTGGACACTT TGCCCCTTCTTAGAATG
quality values	Open. Hide. 0 3 9 11 11 11 11 11 21 24 41 47 37 33 32 32 28 19 25 12 10 12 10 13 17 17 39 33 25 28 16 10 9 9 6 6 6 6 6 6 9 9 16 16 21 13 19 24 41 59 59 33 33 33 33 37 30 21 21 10 9 9 9 11 12 12 15 11 10 10 21 21 30 30 33 33 37 37 37 53 53 47 47 47 50 50 53 59 59 59 59 59 59 59 53 53 57 57 68 50 50 50 47 47 47 42 42 42 50 50 50 68 68 68 50 50 54 54 54 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 57 57 59 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 68 68 68 68 57 57 57 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 68 68 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 57 59 59 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 54 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 59 59 68 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 57 53 53 50 50 50 59 59 43 30 30 12 12 11 19 12 13 18 30 34 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 68 68 68 57 57 57 57 59 59 59 59 48 48 48 48 48 68 68 68 68 68 54 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 53 53 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 48 48 48 47 47 47 47 41 41 41 37 37 41 41 41 43 46 50 47 59 47 47 41 37 37 33 32 31 41 59 44 39 37 37 37 37 37 41 41 41 47 43 43 40 40 40 43 43 48 59 59 59 59 59 59 59 37 36 26 24 17 32 25 28 32 20 24 23 28 28 35 37 37 31 31 35 34 34 28 24 29 32 37 32 32 28 28 28 31 31 41 41 37 37 41 37 37 39 34 34 30 30 32 32 34 34 28 32 28 24 22 22 30 34 43 39 37 32 41 41 43 43 42 39 37 37 32 31 31 37 41 41 37 37 27 28 22 19 19 28 27 30 14 14 11 12 12 23 22 28 25 31 28 24 24 34 28 30 17 17 17 27 20 23 11 11 9 12 11 23 18 31 28 31 15 15 14 23 18 18 20 16 23 19 19 19	Open. Hide. 0 0 3 6 6 6 6 8 8 8 8 8 9 9 9 9 18 14 29 29 37 39 39 37 37 37 37 39 36 31 34 23 18 9 9 9 9 9 8 8 8 8 9 10 10 9 10 10 12 15 26 35 37 37 37 37 37 37 59 27 23 9 9 9 9 9 9 9 9 13 12 14 14 13 15 19 25 33 31 36 36 36 36 38 42 43 43 43 40 47 47 47 47 47 53 50 50 68 50 53 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 57 57 54 47 46 46 46 46 46 57 57 57 68 57 57 57 57 57 57 57 57 68 68 50 50 50 50 68 68 68 68 50 50 50 50 50 50 57 57 57 57 57 47 57 57 57 57 57 57 57 57 51 51 50 57 57 57 54 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 68 57 57 57 52 52 59 59 68 68 68 59 59 57 57 54 57 57 57 57 68 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 47 54 47 47 47 47 48 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 59 59 59 59 57 57 57 48 48 48 57 57 57 59 59 59 59 59 59 59 46 32 32 28 21 16 11 11 8 8 11 10 10 22 26 46 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 50 53 48 48 48 57 57 57 59 59 68 59 57 57 57 57 57 48 48 43 59 59 59 68 68 68 68 68 59 68 57 57 57 57 57 57 57 68 68 68 57 57 48 57 48 48 57 57 59 59 59 59 59 59 59 68 68 68 57 57 57 57 57 57 59 59 59 57 59 57 57 59 59 68 68 59 59 54 57 57 59 59 59 59 59 59 54 59 59 59 59 68 68 68 68 68 68 68 68 57 57 54 57 57 59 59 59 59 59 59 59 68 68 68 68 68 57 57 57 52 52 43 57 57 57 57 57 57 57 57 52 52 52 57 57 57 59 57 57 57 57 57 68 68 68 68 59 59 54 54 54 59 57 68 68 68 68 57 59 59 59 59 57 57 57 57 57 57 57 57 54 54 54 57 59 59 59 59 59 59 59 59 59 59 57 44 43 46 57 57 54 68 68 68 68 68 68 59 57 57 57 57 57 57 59 59 59 68 68 68 68 68 57 59 59 57 57 47 47 43 43 43 48 48 48 57 43 43 36 36 36 44 43 41 41 40 37 37 37 37 31 31 41 43 47 41 41 41 41 47 48 48 48 57 57 48 48 48 48 48 48 48 43 43 43 40 40 39 43 43 39 36 36 36 40 59 44 37 37 34 34 22 22 22 32 32 37 48 48 48 57 48 47 47 34 34 28 28 25 34 34 41 39 39 47 43 39 31 31 30 36 33 26 22 14 14 22 24 28 20 20 28 34 34 41 30 30 20 19 34 34 34 41 27 27 13 13 13 28 21 32 32 37 37 37 37 39 37 37 30 26 26 30 34 39 37 41 41 41 37 37 28 28 24 24 25 34 34 39 43 30 32 18 20 20 30 32 24 25 20 24 27 22 24 28 28 10 8 6 7 7 14 15 16 14 14 13 21 21 25 25 27 27 27 32 19 17 18 18 18 15 20 23 13 16 12 11 8 7 7 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no505_h15.b1 MSMg01no505_h15.b1 CHROMAT_FILE:
MSMg01no505_h15.b1 PHD_FILE: MSMg01no505_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:24 2005
         (657 letters)



>mm_chr4_11932877_11933933
          Length = 1057

 Score = 1106 bits (572), Expect = 0.0
 Identities = 584/590 (98%), Gaps = 4/590 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaatgtcaggaatgtcgtcctttgacctacactcacaatctgtggcaaacacacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 accaatgtcaggaatgtcgtcctttgacctacactcacaatctgtggcaaacacacccaa 531

                                                                       
Query: 61  cccctaacccctgccctgacacacacacacacatcatacacccacacgataaaagtatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cccctaacccctgccctgacacacacacacacatcatacacccacacgataaaagtatta 471

                                                                       
Query: 121 tttaaacccagtgaactccaagtaattataatcacaggagtgccgtggttggcatcggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttaaacccagtgaactccaagtaattataatcacaggagtgccgtggttggcatcggga 411

                                                                       
Query: 181 tgacctctcaggcagatgtaaaggatggacagttccatgtacagtgttgtgggaagagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgacctctcaggcagatgtaaaggatggacagttccatgtacagtgttgtgggaagagat 351

                                                                       
Query: 241 ggctctgattgagcctcctcctcgcttgctgccctttggaaatagtaaatcggccggatg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggctctgagtgagcctcctcctcgcttgctgccctttggaaatagtaaatcggccggatg 291

                                                                       
Query: 301 ttccacaccctccactaggctctacctcttctccttcctctttcccaagcacctcatcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttccacaccctccactaggctctacctcttctccttcctctttcccaagcacctcatcta 231

                                                                       
Query: 361 atatgctacattcttttgtttcaaaaaaggatttatttattatgtaatgtttattatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 atatgctacattcttttgtttcaaaaaaggatttatttattatgtaatgtttattatata 171

                                                                       
Query: 421 ataatatataatatatagatttagtatatagatttattaatttattattatgaatatgt- 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 170 ataatatataatatatagatttagtatatagatttattaatttattattatgaatatgtg 111

                                                                       
Query: 480 ---acacacacacacacacacacacattctaatctagctctctctttctacaaagtggct 536
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tacacacacacacacacacacacacattctaatctagctctctctttctacaaagtggct 51

                                                             
Query: 537 aatagtcaacaatgggaattctaccatgctgcttttttctaagcctagag 586
           |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 50  aatagtcaacaatgggaattctaccacgctgcttttttctaagcctagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information