BAC Information

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BAC

Clone NameMSMg01-505M12
Chromosome4 (Build37)
Map Location 27,623,573 - 27,623,955
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505M12.T7 (MSMg01no505_m12.b1)MSMg01-505M12.TJ (MSMg01no505_m12.g1)
ACCAG580336AG580337
length742742
length of high quality
(start - end)
625 (71 - 695)321 (326 - 646)
definitionCHROMAT_FILE: MSMg01no505_m12.b1 PHD_FILE: MSMg01no505_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:46 2005CHROMAT_FILE: MSMg01no505_m12.g1 PHD_FILE: MSMg01no505_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCGCTTAACATGGAAGGGCCAGTTTTAAAAGCAAAAGCC
AGGATTTTCTTTCTGCTTCCAGGGGTGTTACTTTCTGGATTCTAGGTCTT
CACATTATTAGAATACCTAATAATATCTTAATAGCCTCAGGTTGTTTACT
TGATTAGCCTAAGCTCTACTTGGGGTCCTGGAAATGGGCTGACTCATGCT
TGGTTTTTTGTTGATGTTGTTGTTATTGTTGTTGTTGTTGTTTCTGAAGA
GGTTAGCTCAGAGCCTTTGGAAAATTCCACCAGGTCCCAGAACATGAAGG
TACTCTTTTCCTCCAGAAGTGAGAGACTGATTACATTCCTCAGGAAGACC
ACAGGGGAGACCAAGTGTTGATAAGATAAGAGTAGCCCTTGCTACCTCAT
TCCCTAAGAACCAATCAGGTTTAAAGTCACACTATTTTAACAATCATATT
GTGCCTCATGGTTGCTGCTCTGGTCTACCTCTGAAAAGTGTATAAAAACT
GACTGAACAGGCTGTTCGGGGTCATCGCCTCTCCTTTGTGTGCAGGACAA
CTGCAGCACACTAGAACAATAAACTCCTCTTGCTTTTGCATTGATCTCCT
ACTCCACATGGTCCACTGGGGGTTGGGGGTGGGGTCCCCAATAGCTAAAG
CTCATCAGAGTCTTACATTTCTAGTCATACTTAACCACTCAC
NNGGCCCGATGAAGTGGGTTGCCTGGNGGNCGCCGGTCAAAAAGTGTAGG
TGAACTATAGATTGCTAAAAGAAATTCACTACTGATGAATCTCTAATGGC
TGAGAAGCACCTAAATAAATGTTCACAGTCTTAGTGATCAGTGAAATGCA
AGTTAAAATGACCCTGAGATTCCACTTTCCACCAATCAGAATGGCCAATG
AAAACCTCAAATGACAACACAAGTTGGAGAGGATGAGGAGAAAGAAGAAC
ATTTCTCCATTGCCGGTGGGATTGCAAACTAGTACAATTGCTCTGGAATT
CTATCTGGAGGTTCTTTAAATANTGCAAATAGATCTACCTGAAGACCCAG
CTATACCACTCTTGGGTATATACCCAGAAGATTCCCCACTATGCCATAGG
GGCATTTGATCTACAATGTTCATTGCAGCCTTATTTGTGATAGCCCGAAG
TTTTTAACAACTCAGATGTCCCATGACAGAAGAATGGATACAGAATATGT
GGTTCATTTACACAATGGAATACTACTCAAGAACAAGCTCATCCTGAGTT
TTACAGGCAAATGGATGGAGCTAGAAAATATCACGGTGAGTGAGGTAACT
CAGACTTAAAATGACATGTACGGAATGTACACACTGATACGTTGATATTA
TTTTAAAAAAAAGTATAGAATACCACCCAAAATACAGTCCACAGAACTCA
GAAAGGTCAACAAGCTGAAGTGATCAATTGAGGATGCCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_m12.b1 MSMg01no505_m12.b1 CHROMAT_FILE:
MSMg01no505_m12.b1 PHD_FILE: MSMg01no505_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:46 2005
         (625 letters)



>mm_chr4_27623569_27624593
          Length = 1025

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaagggccagttttaaaagcaaaagccaggattttctttctgcttccaggggtgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atggaagggccagttttaaaagcaaaagccaggattttctttctgcttccaggggtgtta 328

                                                                       
Query: 61  ctttctggattctaggtcttcacattattagaatacctaataatatcttaatagcctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctttctggattctaggtcttcacattattagaatacctaataatatcttaatagcctcag 268

                                                                       
Query: 121 gttgtttacttgattagcctaagctctacttggggtcctggaaatgggctgactcatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 gttgtttacttgattagcctaagctctacttggggtcctggaaatgggctgactcatact 208

                                                                       
Query: 181 tggttttttgttgatgttgttgttattgttgttgttgttgtttctgaagaggttagctca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 207 tggttttttgttgatgttgttgttattgttgttgttgttgtttctgaagaggttaggtca 148

                                                                       
Query: 241 gagcctttggaaaattccaccaggtcccagaacatgaaggtactcttttcctccagaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gagcctttggaaaattccaccaggtcccagaacatgaaggtactcttttcctccagaagt 88

                                                                       
Query: 301 gagagactgattacattcctcaggaagaccacaggggagaccaagtgttgataagataag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gagagactgattacattcctcaggaagaccacaggggagaccaagtgttgataagataag 28

                                  
Query: 361 agtagcccttgctacctcattcc 383
           |||||||||||||||||||||||
Sbjct: 27  agtagcccttgctacctcattcc 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)