BAC Information

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BAC

Clone NameMSMg01-505P08
Chromosome4 (Build37)
Map Location 146,987,389 - 146,988,021
singlet/doubletsinglet
Overlap gene2610305D13Rik
Upstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
Downstream geneLOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505P08.T7 (MSMg01no505_p08.b1)MSMg01-505P08.TJ (MSMg01no505_p08.g1)
ACCAG580468AG580469
length741735
length of high quality
(start - end)
632 (72 - 703)379 (319 - 697)
definitionCHROMAT_FILE: MSMg01no505_p08.b1 PHD_FILE: MSMg01no505_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:59 2005CHROMAT_FILE: MSMg01no505_p08.g1 PHD_FILE: MSMg01no505_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTACTATGAATACTAAGATGGGATGGTTGGGTAAAGCAT
TTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTG
ATGAACTCTCAGACTGCCTTTGTCAGTAAAGCATTTGTCACACTCATTAC
ATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGCTTTCTCAGAGTG
AATTTGTCAGTAAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTC
TCCTGAATGAATTGTATGATGAATACTAAGATGGGAAGGTTGGGTAAAGC
ATTTGTCACTTTCACTATATATGTAAGATTTCTTTCCTGGATAAATTCTC
TGCTGACTTTGAAGATTGTCACTCTGAGTAAAGCATTTGTCAAATTCACC
ACAAGTGTAAGTGCTCATTTCACTATTGTTTTGTCTAGAAACCAAAACCT
CATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGTTCCT
TGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACACAGTCTTT
ATATGTGCAAACTTCTTTAGTGGTCCCAGTTTTATGTCTTTTTAGGTTTG
AGGATTGGAGAGTGGCATCTCTGTGATTAGTGTTATAAGGTGTACTTTCG
GAGGATTCATGGATCACATTTCTAAGCTCATTACATTTAGN
TACAGTGGGGAGGCCAGGNGGNCGCCATTTCAAACAACTTTAGGNGACAC
TATAGATTCCCTCCAAGGAATTCTCAGACTGGTTTTATCAGTAAAGTATT
TGCCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGA
TGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTCACTACA
TTTGCAAATTTTCTCTTCTGTATGAATTCCCTGATGAATACTAAGATGGA
TCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTTGTAAGGTTTCTTT
CCATGATAAATTCTTAGTTGACTTTGTAGGTTTTCTCTCTGGGTAAGATA
TTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGTCTTTTT
TCACCATGACTTTATGTTTAGAAACAAAAATCTTGTCTAATTCTGCATTT
CGGTTGTGTTTTTTCTTCTGCATGTTAATTCCTTGATTGAGACTAATGGT
AGAAAACAAACTTAAACTGTTTACAGAGTCATTGTATTTGCAAACTTCTT
TAGTGTTCCTGGGCTTAAGTCTTTTTTGGGTCGAGAATTGAAGAGCATCA
GAGCTGTGATTAGTTTTGTAAGGTGTACACTGGAGGGATTCAAGAATGAC
ATTGCTAAGCTTGTCCCATTTAGAAGACTTCTCTTGAATATTCATGTGTT
CATGGACAATGTACTGGCTGTCTTTGATCAATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_p08.b1 MSMg01no505_p08.b1 CHROMAT_FILE:
MSMg01no505_p08.b1 PHD_FILE: MSMg01no505_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:59 2005
         (632 letters)



>mm_chr4_146987189_146988221
          Length = 1033

 Score =  692 bits (358), Expect = 0.0
 Identities = 558/646 (86%), Gaps = 44/646 (6%)
 Strand = Plus / Plus

                                                                       
Query: 18  tgggtaaagcatttgtcacactcactgcatttgtaaggtttctctcctgtatgaattctc 77
           |||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 201 tgggtaaagcatttgtcacattcactacatttgtaaggcttctttcctgtatgaattctc 260

                                                                       
Query: 78  tgatga--actctca------gactgcctttgtcagtaaagcatttgtcacactcattac 129
           | ||||  |||   |      || ||   ||| || |||||||||||| ||| ||| | |
Sbjct: 261 tcatgattact---aagaagggattg---ttg-ca-taaagcatttgttacattcaatgc 312

                                                                       
Query: 130 atttgtaaggtttctctcctgtatgaattctctgatgctttctcagagtgaatttgtcag 189
           ||||||||| |||||||||||||||||||||||||||| | || ||| |||||||||  |
Sbjct: 313 atttgtaagttttctctcctgtatgaattctctgatgcatactaagattgaatttgt--g 370

                                                                       
Query: 190 --taaagcatttgtcgcattcactacatttgtaaggtttctctcctgaatgaattgtatg 247
             |||| |||||||| | |||| ||||||| |||  ||||||||| | ||||||| | ||
Sbjct: 371 tttaaaacatttgtcactttcattacatttataaaatttctctccagtatgaattttctg 430

                                                                       
Query: 248 atgaatactaagatgggaa---ggttgggtaaagcatttgtcactttcactatatatgta 304
           ||| |||| |||||  |||     ||| ||||||||||||||||||||||||||| ||||
Sbjct: 431 atggataccaagat-agaactt--ttgtgtaaagcatttgtcactttcactatatttgta 487

                                                                       
Query: 305 agatttctttcctggataaattctctgctgactttgaagattgtcactctgagtaaagca 364
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agatttctttaatggataaattctctgctgactttgaagattgtcactctgagtaaagca 547

                                                                       
Query: 365 tttgtcaaattcaccacaagtgtaagtgctcatttcactattgttttgtc---------- 414
           |||||||||||||||||||||||||||| |||||||||||||||||||||          
Sbjct: 548 tttgtcaaattcaccacaagtgtaagtgttcatttcactattgttttgtctcacaatggg 607

                                                                       
Query: 415 --------tagaaaccaaaacctcatcaagatttttatttctgttgtgttctttcttctc 466
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tttatgtttagaaaccaaaacctcatcaagatttttatttctgttgtgttctttcttctc 667

                                                                       
Query: 467 tatgtgggttccttgattgagactaatgatagaagacccctttaaacagtttacacagtc 526
           |||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct: 668 tatgtgggttccttgattgagactaatggtagaagacacctttaaacggtttacacagtc 727

                                                                       
Query: 527 tttatatgtgcaaacttctttagtggtcccagttttatgtctttttaggtttgaggattg 586
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 728 tttatatgtgcaaacttctttagtggtccgagttttatgtctttttaggtttgaagattg 787

                                                         
Query: 587 gagagtggcatctctgtgattagtgttataaggtgtactttcggag 632
            ||||||||||||||||| ||||| |||| ||||||||||| ||||
Sbjct: 788 aagagtggcatctctgtggttagttttatgaggtgtactttgggag 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space:   636306
Effective search space used:   636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)