Query= MSMg01no506_b10.b1 MSMg01no506_b10.b1 CHROMAT_FILE:
MSMg01no506_b10.b1 PHD_FILE: MSMg01no506_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:09 2005
(628 letters)
>mm_chr4_91520589_91521618
Length = 1030
Score = 1125 bits (582), Expect = 0.0
Identities = 613/624 (98%), Gaps = 3/624 (0%)
Strand = Plus / Plus
Query: 8 gaattccatac-aatatatagtgaattttggttattttcaatccccattaccctccccca 66
||||||||||| || | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 207 gaattccatacaaacacatagtgaattttggtcattttcaatccccattaccctccccca 266
Query: 67 tctccctcttttcctcttgctgaagcccttcttctatcccataaacccacatctgttctc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctccctcttttcctcttgctgaagcccttcttctatcccataaacccacatctgttctc 326
Query: 127 atgattgttctcttaaccactgagttgaattatcaatccttgcatgagttgtggcttgac 186
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgattgtgctcttaaccactgaattgaattatcaatccttgcatgagttgtggcttgac 386
Query: 187 tatcagaacacagacaacatagcagcagctaaaacacagacaaaattggcactacctcgt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 387 tatcagaacacagacaacatagcagcagctaaaacacagacaaaattggcactaccttgt 446
Query: 247 ccaaatactcattaacttcctagagactatctagggaggggtgtgggttcataaacccct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccaaatactcattaacttcctagagactatctagggaggggtgtgggttcataaacccct 506
Query: 307 tccacatatgtgatggaatgatgatggggccaatcttgtacaggtcctgtgcaggcagcc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tccacatatgtgatggaatgatgatggggccaatcttgtacaggtcctgtgcaggcagcc 566
Query: 367 ataactaaagtgcgttcgtgagtgcaatggctctgttatgtccagggaatactgtttgac 426
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ataactaaagtgcgttcgtgactgcaatggctctgttatgtccagggaatactgtttgac 626
Query: 427 agcacacctctccacactttagcttttacattctctctgactatcttctaacacgttcac 486
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 627 agcacacctctccacactttagcttttacattctctctggctatcttctaacacgttcac 686
Query: 487 caaataggctaatagtatccttaaacaccatggtccaatgttttagtttatcacattttt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caaataggctaatagtatccttaaacaccatggtccaatgttttagtttatcacattttt 746
Query: 547 ttt--gtatggatgttggtaggttgtatatttaataaaagtagctacattgttgtttatt 604
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tttttgtatggatgttggtaggttgtatatttaataaaagtagctacattgttgtttatt 806
Query: 605 acatgttcagtgtccaagtgatta 628
||||||||||||||||||||||||
Sbjct: 807 acatgttcagtgtccaagtgatta 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1030
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1020
Effective search space: 630360
Effective search space used: 630360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_b10.g1 MSMg01no506_b10.g1 CHROMAT_FILE:
MSMg01no506_b10.g1 PHD_FILE: MSMg01no506_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:09 2005
(644 letters)
>mm_chr4_91719373_91720416
Length = 1044
Score = 934 bits (483), Expect = 0.0
Identities = 493/497 (99%), Gaps = 2/497 (0%)
Strand = Plus / Minus
Query: 148 aaagtttggagctcttacatgtacaaaacagtggatacttaaaatatcaaagtaaaagcc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 aaagtttggagctcttacatgtacaaaacagtggatacttaaaatatcaaagtaaaagcc 985
Query: 208 gggtgtggtggcacacacctttaatcccagcacttgggaggcagaggcaggcagatcaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gggtgtggtggcacacacctttaatcccagcacttgggaggcagaggcaggcagatcaat 925
Query: 268 gagctcgaggccagcctggtctacagattgagttccaggacagccagggctacacagaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 gagctcgaggccagcctggtctacagattgagttccaggacagccagggctacacagaga 865
Query: 328 actcctgtatcataaaataaaaaaaaataaatgaagtgatattatgaacaaatgtggcaa 387
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 864 actcctgtatcataaaataaaaaaaa--aaatgaagtgatattatgaacaaatgtggcaa 807
Query: 388 aggccaaattagttgaatggaggagtgcttacctagcagactcaagaacccctgcctatt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aggccaaattagttgaatggaggagtgcttacctagcagactcaagaacccctgcctatt 747
Query: 448 attgtcatggctctgctgtacaatcatcctgtgtatgtgcaatacagaagtatcttaaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 attgtcatggctctgctgtacaatcatcctgtgtatgtgcaatacagaagtatcttaaga 687
Query: 508 accacaatgcaacaaaattataattatcatttataattagctaatttaaagtttgcagtt 567
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 686 accacaatgtaacaaaattataattatcatttataattaactaatttaaagtttgcagtt 627
Query: 568 cattttgccttccttacatttattaaatgaaatctatcatcaagttctttatgcttgttt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cattttgccttccttacatttattaaatgaaatctatcatcaagttctttatgcttgttt 567
Query: 628 ttattctttttgagtga 644
|||||||||||||||||
Sbjct: 566 ttattctttttgagtga 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
