Query= MSMg01no506_e13.b1 MSMg01no506_e13.b1 CHROMAT_FILE:
MSMg01no506_e13.b1 PHD_FILE: MSMg01no506_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:26 2005
(647 letters)
>mm_chr4_114495417_114496464
Length = 1048
Score = 1207 bits (624), Expect = 0.0
Identities = 642/650 (98%), Gaps = 5/650 (0%)
Strand = Plus / Plus
Query: 1 agatgctgtggctcacaatcatctgtaatgggattcaatgccctcttctggtgtgtgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgctgtggctcacaatcatctgtaatgggattcaatgccctcttctggtgtgtgtga 260
Query: 61 agacatctactgtgtactcacatacataaaataaataagtctagacctctgttttgattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacatctactgtgtactcacatacataaaataaataagtctagacctctgttttgattg 320
Query: 121 tactggtatcctcgcccctcattctacagacccagatctggaaagccattagtatagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactggtatcctcgcccctcattctacagacccagatctggaaagccattagtatagcac 380
Query: 181 atgaagaatacatgagacttttagctattgtggaattagtatgcggtgggtacttcatga 240
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 aggaagaatacatgagacttttagctattgtgaaattagtatgcggtgggtacttcatga 440
Query: 241 gccttctgt---ttttgacatcttgcctggtcctcagaatgaatgtttgagaatcttctt 297
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccttctgtacatt--gacatcttgcctggtcctcagaatgaatgtttgagaatcttctt 498
Query: 298 gaaactctctgcctttcactctcctgtgtctttggacttgctgttccttcagccctacgt 357
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaaactctccgcctttcactctcctgtgtctttggacttgctgttccttcagccctacgt 558
Query: 358 gtctcctctctttacctgaggtactatttaggattccatagacttcagatagaagagccc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtctcctctctttacctgaggtactatttaggattccatagacttcagatagaagagccc 618
Query: 418 acagcacagtggttcaaacaggaaagaagtttggcccttcccacaagtttagccatgtca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acagcacagtggttcaaacaggaaagaagtttggcccttcccacaagtttagccatgtca 678
Query: 478 tgtggtccacaagaaaaacaaaacaacaacaaaaaacaagacagctgtgctcagccaggg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtggtccacaagaaaaacaaaacaacaacaaaaaacaagacagctgtgctcagccaggg 738
Query: 538 ccccagcttcctactattttgtggatcctccacatcctcagagccaaaacttgttcctct 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccccagcttcctactattttgtggatcctccacatcctcagagccaaaacttgttcctct 798
Query: 598 acaccacagccatattcagcctagggccatggtagcatgcagctttacct 647
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 acaccacagccatattcagcctagggccatggtagcatgcagctttacct 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space: 661206
Effective search space used: 661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_e13.g1 MSMg01no506_e13.g1 CHROMAT_FILE:
MSMg01no506_e13.g1 PHD_FILE: MSMg01no506_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:26 2005
(408 letters)
>mm_chr4_114635381_114636188
Length = 808
Score = 750 bits (388), Expect = 0.0
Identities = 403/408 (98%)
Strand = Plus / Minus
Query: 1 acgacaacagagagagcttggaaaagaggtacctctcaggcctcccctcaccacctcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acgacaacagagagagcttggaaaagaggtacctctcaggcctcccctcaccacctcact 549
Query: 61 cctgccctgctcgtggggatcagttctgttctgttcattctcacacaggcacagtggctt 120
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 548 cctgccctgctcgtggggaccagttctgttctgttcattctcacataggcacagtggctt 489
Query: 121 ttgtagagagagaaagcagcagacttgcttgtcaacctttctgtaatgtggaagagggag 180
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 488 ttgtagagagagaaagcagcagacttgcttatcaccctttctgtaatgtggaagagggag 429
Query: 181 gacaattaacctacagccatgaaataattgtttcttttgcagaattcagacttaccttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gacaattaacctacagccatgaaataattgtttcttttgcagaattcagacttaccttga 369
Query: 241 atcaacgaaaccaattattgacttatatgaagaaatggggaaagtcaagaagatagatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atcaacgaaaccaattattgacttatatgaagaaatggggaaagtcaagaagatagatgc 309
Query: 301 ttctaagtctgttgatgaagtaagtgtgtctgtttgtctttgtagcaagcaaaacatgtg 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 308 ttctaagtctgttgatgaagtaagtgtgtctgtttgtctttgtagcaaacaaaacatgtg 249
Query: 361 accattggggaggcatgagaaaagatagtctaagggagagtactttta 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 accattggggaggcatgagaaaagatagtctaagggagagtactttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
