GTCTTCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGAGTTATTCTCAGCTATATAACAATATAGCTTATTAG
TCTTAGAACAGCAAAAACATGATGAGGAAAATCAAGCTAATGAGCAAACC
ACTGTTCAGCCATAAAAGGATGGAATTCTTTCATTGCAACAATATTAGTA
AAACTAGGGGTCATTATGCCAAGTGAAAGAAGCCACAGAGACGTAGATAC
CATGGACAGATTCATTCCTTAAGCAAGATTTTGAAAGAGTGATCTCACAG
AAGGTGGGAGTAGAGTATGACATAATCGAAGATGAAGAAACTACAGACGG
AGAAAGAAAGAAGAAAGCTTGGTTAACAGACAATAAGTTAAAGTTAAGCA
AAATGACTTCTCTTCTATTGGTTCAATAGGGTGACCAACTCTCTAAATCT
ATCATATTGCATCTTTAAGAAAGCTTCATTTCATAAACATGATTGATCAA
CTTGTTAGCCATTGGTGATCATTTTATCCTTCCAGTCTTACTCTTAACAC
TTAAAGAAGAAGGTACAGCTGAATATCCCAGTACTCTTATCCCACTTTGG
TTCTCTCTGTGACCAGCCCTCATTCTGAAGGAAGCTGTGGCCTGACAGAC
TTAGGTGAACTCACCGGCACACACATGTGAGCACACTGAAGATTCCAGGA
CTTCCAGCAACCTTTATGAACAAACTTTCTTTCTATTCCTGGATTCAGNC
CAGTCTACTC

TTTTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTAGGATGTGGAAAGAGG
AGGTTCCCAGTCAGTCCCAGGAGAATAGCGAGTTCCAGGCTAGAGGGTAG
GTAGGCTACAGGAGACTCAGGAGGGGAAAAAATGAAACAAAGAATAAAAC
CTTCTGTTTGTGCAGCCAGGAGAATTGAAAATTTTTCCTCAAATGAGGCA
GAGAAAGGTGTTCCCCAAGTTCTCTGGAGAAAAGTAATGGCATGGTTGTA
GGTTGTAAGTAAAAATTGTGCTGTTCCCTAGTAGAAAGGTACCTTTCAAA
TTCTTTCTCTTGAATCCTAGTCTTTAAATGTTGAAAGGTCACAAACACTC
TTGCTTGCCTTTCAAAGCAGGAACGTGCTGTTGACAAAGCTACAAGACTG
CAAAATGTCAGACCAAGAAGTCATTATTCATATTAGAATATATATGTGAT
TTTTTAAACCCGTAAATACAAGTATTTATATATAATATATAAGTATAAGT
ATAAATACAACTATATAACTATATATGTGTATAATTCTTTTTTTTTCTTT
CTGTTTTTGTAAACTTCATATTTCTATGGCAAAGAATCTTTGAGCAGGGC
TAGCATCAGAGAATCCCAGGGCAATGCTGTAGTTAAAAATATTAAGTATA
CATGAAATACTTGAGGGTGGATTTCTGAGTTCTAGGCCAGCTTGGTCTAC
AAAGTGAGTTCCAGG

Query= MSMg01no506_j07.g1 MSMg01no506_j07.g1 CHROMAT_FILE:
MSMg01no506_j07.g1 PHD_FILE: MSMg01no506_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:50 2005
         (581 letters)



>mm_chr4_7130019_7131000
          Length = 982

 Score = 1054 bits (545), Expect = 0.0
 Identities = 575/585 (98%), Gaps = 6/585 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctaggatgtggaaag-aggaggttcccagtcagtcccaggagaatagcgagttccagg 59
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 acctaggatgtggaaagca-gaggttcccagtcagtcccaggagaatagcgagttccagg 574

                                                                       
Query: 60  ctagagggtaggtaggctacaggagactcaggagggg-aaaaaatgaaacaaagaataaa 118
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 573 ctagagggtaggtaggctacaggagactcaggaggggaaaaaaatgaaacaaagaataaa 514

                                                                       
Query: 119 accttctgtttgtgcagccaggagaattgaaaa-tttttcctcaaatgaggcagagaaag 177
           |||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct: 513 accttctgtttgtgcagccaggagaatt-aaaactttttccccaaatgaggcagagaaag 455

                                                                       
Query: 178 gtgttccccaagttctctggagaaaagtaatggcatggttgtaggttgtaagtaaaaatt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtgttccccaagttctctggagaaaagtaatggcatggttgtaggttgtaagtaaaaatt 395

                                                                       
Query: 238 gtgctgttccctagtagaaaggtacctttcaaattctttctcttgaatcctagtctttaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtgctgttccctagtagaaaggtacctttcaaattctttctcttgaatcctagtctttaa 335

                                                                       
Query: 298 atgttgaaaggtcacaaacactcttgcttgcctttcaaagcaggaacgtgctgttgacaa 357
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 334 atgttgaaaggtcacaaacactcttgcttgcctttcagagcaggaacatgctgttgacaa 275

                                                                       
Query: 358 agctacaagactgcaaaatgtcagaccaagaagtcattattcatattagaatatatatgt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agctacaagactgcaaaatgtcagaccaagaagtcattattcatattagaatatatatgt 215

                                                                       
Query: 418 gattttttaaacccgtaaatacaagtatttatatataatatataagtataagtataaata 477
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gattttttaaacccataaatacaagtatttatatataatatataagtataagtataaata 155

                                                                       
Query: 478 caactatataactatatatgtgtataattc-tttttttttctttctgtttttgtaaactt 536
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 154 caactatataactatatatgtgtataattcttttttttttctttctgtttttgtaaactt 95

                                                        
Query: 537 catatttctatggcaaagaatctttgagcagggctagcatcagag 581
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  catatttctatggcaaagaatctttgagcagggctagcatcagag 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space:   555012
Effective search space used:   555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)