TTCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCGCGGAATTCATCAATTTTCGTTTTTATGGATATAAGTCAAAACCAAG
ACAAACCAAATGTTCTGCACTCTGGCAAATATGGGAACAGTGGAGCCGAG
AAACTTAACTGTGCCTCATTTCTCTAGGGATTCTCTGTAGAGGAAACTGA
TGTAAATACTTGACTGTCCAACAGAATAAGGATCTAAACATTGCCTAAAT
GAAACACCAATTAGCTGGCAAGATGAGTGTTCTGCATCACACTGTTTTAA
TAGTTATTATTATTCTATATGTTAGAATATCTTTCATTTTTATGTAGTAA
AATGATTATAGGTAAATGAAATTTTCATCAAAATCCATTGATTCTTGAAA
ATAAGGTACACTCTTTGTGAAAAAGGCCTCATTTTGATTGACTTTATATT
CTTCTTTTATCTTTTTCAAATACTGCACATTATTTTTTCTGATTTTTGCA
TTGATTTCTGTCTGATTTTCCAAAAGACTATATTACCAACCTCTGTATAA
AAAAACCATATTTGTAGTGTTGTTTCTGCTTGGCTATTAAATATTGGTCA
TCCTGAAGAACTTGGGCTCCCTGATTACAATCATCCAGGAGACAAGAACT
TCACCTACCACAGTTAATAAATCCAGAGAATAGATTTGGAGTCTGGTTAT
AAGAACAAGAGCTTGTGCTTGTCGGTGAATTCCAGGGCACCCCG

NNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGATGTTTTGAGTTAAGATCT
TTTTGCATTTTGCATTTTCTTTGATTGTTGTGTCTATGTTTTCTATGGAA
TCCTCTGCACCTGATATTCTCTCTTTAATCTCTTGTATTTTGTTGCTGAT
GCGTGCGTCTATGGTTCGTGATTTCTTTCCTAGGATTTCTATCTTCAGAA
ATGTCTCCCTTTTGGTTTTCTTTAATGTTTCTACTTCCATTTTTAGATCT
TGGATGGTTTTGTTCAATTCCATCTCCTATTTTGTTGTGTTTTCCTGTAA
TTCTTTAAGGGATTTTTGTGTTGCTTCTTTAAGTACATCTACCTATTTAG
CCGTGTTTTCCTGTAATTCTTTAAGGGATTTTTGTGCTTCCTCTTTAAGG
CCTTCTCCCTGTTTAGCCATGTTCTCCAGTATTTCTTTAAGTGAGTTATT
AATGTTCGTCTTAAAATCCTCTACCAGTATCATGAGATCTGATTTTATAT
CAGAATCTTGCTTTTCAGGTGTGTTATGGTATCCAGGACTCACTGTGGTG
GGAGTGCTGGGTCCTGATGATGCTGAGTGGTCTTGGGTTCTGTTAGTAAG
ATTCTTAAGTTTGCCTTTAGCCATCTGGTAATCTCTGGAGGTAGTTGGTC
TAGCTGTCTTTGGGTGGAACTTTTTCCTCCTGTGATTTTGTTAGCCTCTG
TCACACN

Query= MSMg01no506_n12.b1 MSMg01no506_n12.b1 CHROMAT_FILE:
MSMg01no506_n12.b1 PHD_FILE: MSMg01no506_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:10 2005
         (643 letters)



>mm_chr4_7175124_7176163
          Length = 1040

 Score = 1203 bits (622), Expect = 0.0
 Identities = 635/642 (98%), Gaps = 7/642 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcatc--aattttcgtttttatggatataagtcaaaaccaagacaaaccaaatgtt 61
           |||||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gaattcatcaaaattt--gtttttatggatataagtcaaaaccaagacaaaccaaatgtt 783

                                                                       
Query: 62  ctgcactctggcaaatatgggaacagtggagccgagaaacttaactgtgcctcatttctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ctgcactctggcaaatatgggaacagtggagccgagaaacttaactgtgcctcatttctc 723

                                                                       
Query: 122 tagggattctctgtagaggaaactgatgtaaatacttgactgtccaacagaataaggatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tagggattctctgtagaggaaactgatgtaaatacttgactgtccaacagaataaggatc 663

                                                                       
Query: 182 taaacattgcctaaatgaaacaccaattagctggcaagatgagtgttctgcatcacactg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 taaacattgcctaaatgaaacaccaattagctggcaagatgagtgttctgcatcacactg 603

                                                                       
Query: 242 ttttaatagttattattattctatatgttagaatatctttcatttttatgtagtaaaatg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttttaatagttattattattctatatgttagaatatctttcatttttatgtagtaaaatg 543

                                                                       
Query: 302 attataggtaaatgaaattttcatcaaaatccattgattcttgaaaataaggtacactct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 attataggtaaatgaaattttcatcaaaatccattgattcttgaaaataaggtacactct 483

                                                                       
Query: 362 ttgtgaaaaaggcctcattttgattgactttatattcttcttttatctttttcaaatact 421
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 482 ttgtgaaaaaggcctcattttgattgactttata---ttcttttatctttttcaaatact 426

                                                                       
Query: 422 gcacattattttttctgatttttgcattgatttctgtctgattttccaaaagactatatt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcacattattttttctgatttttgcattgatttctgtctgattttccaaaagactatatt 366

                                                                       
Query: 482 accaacctctgtataaaaaaaccatatttgtagtgttgtttctgcttggctattaaatat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 accaacctctgtataaaaaaaccatatttgtagtgttgtttctgcttggctattaaatat 306

                                                                       
Query: 542 tggtcatcctgaagaacttgggctccctgattacaatcatccaggagacaagaacttcac 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggtcatcctgaagaacttgggctccctgattacaatcatccaggagacaagaacttcac 246

                                                     
Query: 602 ctaccacagttaataaatccagagaatagatttggagtctgg 643
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctaccacagttaataaatccagagaatagatttggagtctgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1040
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1030
Effective search space:   651990
Effective search space used:   651990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)