BAC Information

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BAC

Clone NameMSMg01-506O23
Chromosome4 (Build37)
Map Location 138,958,360 - 139,132,171
singlet/doubletdoublet
Overlap geneZubr1
Upstream geneLOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik
Downstream geneC79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506O23.T7 (MSMg01no506_o23.b1)MSMg01-506O23.TJ (MSMg01no506_o23.g1)
ACCAG581209AG581210
length751755
length of high quality
(start - end)		516 (51 - 566)607 (77 - 683)
definitionCHROMAT_FILE: MSMg01no506_o23.b1 PHD_FILE: MSMg01no506_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:18 2005CHROMAT_FILE: MSMg01no506_o23.g1 PHD_FILE: MSMg01no506_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,131,659 - 139,132,171)(138,958,360 - 138,958,966)
sequence
ATACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGGGACCTTTCCAATAAACCATGAGATTTGGGAGAGTATG
AAGAAGATGATGAATTTCTGAAAGGCCAGTGTCTGGTTTTGATTCTGCAA
GCCAGAGATCTTGGCCTTAAAGACCTGGAACAAGATAGGCGACCCCGGGG
CCCTAGGGACAGAGCCATCCATCTTCACACGTGAGCTCATTAAATTCAAG
GACAAAAAAAAAATGACAATGAGCTAGTTGAGACTGTTTTCTTTACACCT
GCTATGGGAAAGGGAATCTACCACCAACATCTCGGGGAATACCTAGGCTA
GGAGACACACCAGCCATGACTTCCATCAAAGGATCAAGTCTTGACTTTCA
CCGCGGATTAGCCAAGCTGCCTTGAGCAAGACACTTGGTACCTCTTCACC
TCAGTTTCCTCATCTGCAGTATGGGGACAAGGCTGCCTCACACCGCACTG
TCATGTGGACAGAATGAGATCACCACAAATCCGCTGGTTATTACGTCCCT
GGGAAACAATGTGCCTGGCCCCAGGGGTCGGCGCCCAGGTATCCCGCGCT
CCCTGTGCTCGTTCGCGGATTTAGATGACCTAGTCCTCCCGCAGTTCGCA
TTCTATATGCCAGGTCCTGCTGCCGGTTCTTATAGCGCCGGATGACGGGC
TTCTTCCACTCACCTCTGGTTGTACTTTTTTCGCCCGTTTCTTTTACTTG
G

NTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTTGGCAGAAGCTTTATCCCT
GACGCCACGCCACTGCTCTGAGTTGTTTCTGTTCCTTTAGTTCTCAGGCC
TGGCTTCCAACATCCTGAACTTCATCACGACTTCCATGCTGAACTCTCGA
AACAGTTTCATCCGGAGCTATCTGAGCGCCTCTCTCTCAGAGCACCACAT
GGCCACTCTGGCCAGCATCATTAAGGAGGTGGACAAAGATGGACTCAAGG
GTCAGTGGAAAGGCTGGGTGCTGCTGCAGGGCACTTAGGGTTCCAAGTTC
CTGAGTAACTGTCTCCCTCTGTCCAAAGGGTCATCAGATGAGGACTTTGC
TGCTGCTCTCTATCACTTCAACCACTCGCTGGTGACTTCTGACCTACAGT
CCCCAAACCTGCAGGTGGGTGTGCACTGTTGCTGCCCAGGAGGGAGCACT
TCATGCTTTCCCTGGAACGTGGTGGTTCTCATCATTGAAGGATGCTTTGT
CCTGACTCTGTGCCTGGGTGGTCTGTGTTGCCCTGTGTAGAGGTTAGGAT
CGATGGAAGAAAAAGATGTTCTTTCCCCAAGTCATGAAGATTAAAGGAAG
AAAACAGAAAAACTCCCAGTGCTTCTCATAGTAGACCAGTAGGTGGTACT
CACCAAAAGCTATTTATTTACAACATATGGTTGATAAATGTTCACCCGTC
TTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_o23.b1 MSMg01no506_o23.b1 CHROMAT_FILE:
MSMg01no506_o23.b1 PHD_FILE: MSMg01no506_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:18 2005
         (516 letters)



>mm_chr4_139131642_139132557
          Length = 916

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcatgggacctttccaataaaccatgagatttgggagagtatgaagaagatgatga 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattcatgggacctagccaataaaccatgagatttgggagagtatgaagaagatgatga 471

                                                                       
Query: 64  atttctgaaaggccagtgtctggttttgattctgcaagccagagatcttggccttaaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 atttctgaaaggccagtgtctggttttgattctgcaagccagagatcttggccttaaaga 411

                                                                       
Query: 124 cctggaacaagataggcgaccccggggccctagggacagagccatccatcttcacacgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cctggaacaagataggcgaccccggggccctagggacagagccatccatcttcacacgtg 351

                                                                       
Query: 184 agctcattaaattcaaggacaaaaaaaaaatgacaatgagctagttgagactgttttctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agctcattaaattcaaggacaaaaaaaaaatgacaatgagctagttgagactgttttctt 291

                                                                       
Query: 244 tacacctgctatgggaaagggaatctaccaccaacatctcggggaatacctaggctagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tacacctgctatgggaaagggaatctaccaccaacatctcggggaatacctaggctagga 231

                                                                       
Query: 304 gacacaccagccatgacttccatcaaaggatcaagtcttgactttcaccgcggattagcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gacacaccagccatgacttccatcaaaggatcaagtcttgactttcaccgcggattagcc 171

                                                                       
Query: 364 aagctgccttgagcaagacacttggtacctcttcacctcagtttcctcatctgcagtatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aagctgccttgagcaagacacttggtacctcttcacctcagtttcctcatctgcagtatg 111

                                                                       
Query: 424 gggacaaggctgcctcacaccgcactgtcatgtggacagaatgagatcaccacaaatccg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gggacaaggctgcctcacaccgcactgtcatgtggacagaatgagatcaccacaaatccg 51

                                            
Query: 484 ctggttattacgtccctgggaaacaatgtgcct 516
           |||||||||||||||||||||||||||||||||
Sbjct: 50  ctggttattacgtccctgggaaacaatgtgcct 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_o23.g1 MSMg01no506_o23.g1 CHROMAT_FILE:
MSMg01no506_o23.g1 PHD_FILE: MSMg01no506_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:18 2005
         (607 letters)



>mm_chr4_138958160_138959166
          Length = 1007

 Score = 1174 bits (607), Expect = 0.0
 Identities = 607/607 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggttggcagaagctttatccctgacgccacgccactgctctgagttgtttctgttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggttggcagaagctttatccctgacgccacgccactgctctgagttgtttctgttcct 260

                                                                       
Query: 61  ttagttctcaggcctggcttccaacatcctgaacttcatcacgacttccatgctgaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagttctcaggcctggcttccaacatcctgaacttcatcacgacttccatgctgaactc 320

                                                                       
Query: 121 tcgaaacagtttcatccggagctatctgagcgcctctctctcagagcaccacatggccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgaaacagtttcatccggagctatctgagcgcctctctctcagagcaccacatggccac 380

                                                                       
Query: 181 tctggccagcatcattaaggaggtggacaaagatggactcaagggtcagtggaaaggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggccagcatcattaaggaggtggacaaagatggactcaagggtcagtggaaaggctg 440

                                                                       
Query: 241 ggtgctgctgcagggcacttagggttccaagttcctgagtaactgtctccctctgtccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgctgctgcagggcacttagggttccaagttcctgagtaactgtctccctctgtccaa 500

                                                                       
Query: 301 agggtcatcagatgaggactttgctgctgctctctatcacttcaaccactcgctggtgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggtcatcagatgaggactttgctgctgctctctatcacttcaaccactcgctggtgac 560

                                                                       
Query: 361 ttctgacctacagtccccaaacctgcaggtgggtgtgcactgttgctgcccaggagggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgacctacagtccccaaacctgcaggtgggtgtgcactgttgctgcccaggagggag 620

                                                                       
Query: 421 cacttcatgctttccctggaacgtggtggttctcatcattgaaggatgctttgtcctgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacttcatgctttccctggaacgtggtggttctcatcattgaaggatgctttgtcctgac 680

                                                                       
Query: 481 tctgtgcctgggtggtctgtgttgccctgtgtagaggttaggatcgatggaagaaaaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgtgcctgggtggtctgtgttgccctgtgtagaggttaggatcgatggaagaaaaaga 740

                                                                       
Query: 541 tgttctttccccaagtcatgaagattaaaggaagaaaacagaaaaactcccagtgcttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgttctttccccaagtcatgaagattaaaggaagaaaacagaaaaactcccagtgcttct 800

                  
Query: 601 catagta 607
           |||||||
Sbjct: 801 catagta 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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