BAC Information

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BAC

Clone NameMSMg01-507I23
Chromosome4 (Build37)
Map Location 105,595,060 - 105,775,082
singlet/doubletdoublet
Overlap geneMap1lc3
Upstream gene1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1
Downstream geneLOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507I23.T7 (MSMg01no507_i23.b1)MSMg01-507I23.TJ (MSMg01no507_i23.g1)
ACCAG581680AG581681
length770772
length of high quality
(start - end)		633 (78 - 710)517 (79 - 595)
definitionCHROMAT_FILE: MSMg01no507_i23.b1 PHD_FILE: MSMg01no507_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:09 2005CHROMAT_FILE: MSMg01no507_i23.g1 PHD_FILE: MSMg01no507_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,774,451 - 105,775,082)(105,595,060 - 105,595,576)
sequence
NNAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNAAATCC
GCGGAATTCACGTGCCTTTCTCTTCAGGGAAAGCCACACAAACACAGTCA
AACATATGCGAGTGAAACAAGCTCTCTGGTGCCTTGGGGACCATGGTTCC
AACAGTCAGATACCCAAAAGCGAGTGGCACAAATGTCCCTTTAGAACGTC
TTCCTTTGAGTCTGGACATTAGCTCCAGGTGAAGCTTGGTTTCCTCGTCA
CCAAGGTGACCAAGGGAAGTAGTAGCGAGTGAACGCATGTATTTCTCAGA
CCTTGGGCTGGCAGCTATTTCTGGAAGTTTTATAAATCCCCAGGACGTGG
TTGAGGTGGTATGCTGACAACTGCCTTACAATTTTGTGCACCTACTATGC
ATGAAGCATTTTCCTTGATGCTATCCCCCATGGCTTTCCTAAGAGGCAGG
TGGTGGAGGGAGAACTGGGCCAGCTGCCAAGGATTTATATTGTTCCAAAA
TAAAAGACAAATTGAAGTTGAAAAAGTCACTGGGGTGAGGTTTAAGGGGA
CTCCTTGGAAACTTGCGGCTTCAGCTTCGTACAGGATGCCTGGTTATCTT
GCTGAGTTCTTTGGAAGGGTGGAACAAATGTCTAAGCAAACAGATAAATT
GGAAACAAAGGCTTCCTTTCCCTCACGCCCTTTTCTGTGTGTCTCTCTTC
ACCTCTCATCTCTTGATTGATACAGGGACCTTTAGGATAATGGGAAAGGT
TGCTTGTCCTGAGCCCTTGN

TTAAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCATGATGAGTTATTGTGG
GTTTGATTCTGGTTCTCATAATGCATTGCGATCTATCTGAGAAGATTGAT
CCCAGAAGAGAGACCCATCTAGAATTAGAGGCTTTTATGATTCTTTTGAA
AGCCTAGAAATGTGGCTTGTCATCAGGGTCCACAGCCTTCAAGATCATTC
ATGTGCAAGCTGACCATCATATTCCCCCTCTCTGAGTTTGGGACAGTGAG
TCACTGTGTCCCTACAGTCCCTTTGGGAGATGAGTGATGGGCTCATCTGG
AACCTCTATCCCATAGCCCTTCGTTTCTCCATGGTGACTAGTCATTGTGA
GCAGGAGACATGAGTCAAGGGGAGCTAGCACAAGTGTGGAAGTATGAAGG
GTTCACTTGTTCCTTCAACACCAATCACCGAGAGCTATCACACAGCCATG
AGTGGCCTGGCCTGATGACATCAAGAGTGGGGAGGGCCTGAGATCCCCAG
ACCTGATTCAAAAATCATCTGTCAACAAGGGCACAGCTTGTGTGCCCAGT
AAATGACCACAGTAATATCTTGCCCACATTTCTCAGTCAGGAAAACTAAG
TTTCCCACTCAAGAAGTAGGGGGGGGAAAAGGTACTTAGGAGAAAAAAAT
AAAATGAAAAAAGCAAAGTAAAGAAACGTTTCCAGCCTGGGTGTGAGGCA
GAGAATGTTCCTAAAGCGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_i23.b1 MSMg01no507_i23.b1 CHROMAT_FILE:
MSMg01no507_i23.b1 PHD_FILE: MSMg01no507_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:09 2005
         (633 letters)



>mm_chr4_105774251_105775284
          Length = 1034

 Score = 1168 bits (604), Expect = 0.0
 Identities = 625/632 (98%), Gaps = 1/632 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaagccacacaaacacagtcaaacatatgcgagtgaaacaagctctctggtgccttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ggaaagccacacaaacacagtcaaacatatgcgagtgaaacaagctctctggtgccttgg 773

                                                                       
Query: 61  ggaccatggttccaacagtcagatacccaaaagcgagtggcacaaatgtccctttagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ggaccatggttccaacagtcagatacccaaaagcgagtggcacaaatgtccctttagaac 713

                                                                       
Query: 121 gtcttcctttgagtctggacattagctccaggtgaagcttggtttcctcgtcaccaaggt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 712 gtcttcctttgagtctggacattagctccaggtggagcttggtttcctcgtcaccaaggt 653

                                                                       
Query: 181 gaccaagggaagtagtagcgagtgaacgcatgtatttctcagaccttgggctggcagcta 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 652 gaccaagggaagtagtagcgagtgaacgcatgtacttctcagaccttgggctggcagcta 593

                                                                       
Query: 241 tttctggaagttttataaat-ccccaggacgtggttgaggtggtatgctgacaactgcct 299
           ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 592 tttctggaagtttaataaatcccccaggacgtggttgaggtggcatgctgacaactgcct 533

                                                                       
Query: 300 tacaattttgtgcacctactatgcatgaagcattttccttgatgctatcccccatggctt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tacaattttgtgcacctactatgcatgaagcattttccttgatgctatcccccatggctt 473

                                                                       
Query: 360 tcctaagaggcaggtggtggagggagaactgggccagctgccaaggatttatattgttcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tcctaagaggcaggtggtggagggagaactgggccagctgccaaggatttatattgttcc 413

                                                                       
Query: 420 aaaataaaagacaaattgaagttgaaaaagtcactggggtgaggtttaaggggactcctt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaaataaaagacaaattgaagttgaaaaagtcactggggtgaggtttaaggggactcctt 353

                                                                       
Query: 480 ggaaacttgcggcttcagcttcgtacaggatgcctggttatcttgctgagttctttggaa 539
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 352 ggaaacttgcggcttcagctttgtacaggatgcctggttatctcgctgagttctttggaa 293

                                                                       
Query: 540 gggtggaacaaatgtctaagcaaacagataaattggaaacaaaggcttcctttccctcac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gggtggaacaaatgtctaagcaaacagataaattggaaacaaaggcttcctttccctcac 233

                                           
Query: 600 gcccttttctgtgtgtctctcttcacctctca 631
           ||||||||||||||||||||||||||||||||
Sbjct: 232 gcccttttctgtgtgtctctcttcacctctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space:   637952
Effective search space used:   637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_i23.g1 MSMg01no507_i23.g1 CHROMAT_FILE:
MSMg01no507_i23.g1 PHD_FILE: MSMg01no507_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:09 2005
         (517 letters)



>mm_chr4_105594860_105595776
          Length = 917

 Score =  961 bits (497), Expect = 0.0
 Identities = 512/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcatgatgagttattgtgggtttgattctggttctcataatgcattgcgatctatct 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 actgcatgatgagttattgtgggtttgattctggttctcataacgcattgcgatctatct 260

                                                                       
Query: 61  gagaagattgatcccagaagagagacccatctagaattagaggcttttatgattcttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaagattgatcccagaagagagacccatctagaattagaggcttttatgattcttttg 320

                                                                       
Query: 121 aaagcctagaaatgtggcttgtcatcagggtccacagccttcaagatcattcatgtgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagcctagaaatgtggcttgtcatcagggtccacagccttcaagatcattcatgtgcaa 380

                                                                       
Query: 181 gctgaccatcatattccccctctctgagtttgggacagtgagtcactgtgtccctacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgaccatcatattccccctctctgagtttgggacagtgagtcactgtgtccctacagt 440

                                                                       
Query: 241 ccctttgggagatgagtgatgggctcatctggaacctctatcccatagcccttcgtttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ccctttgggagatgagtgatgggctcatctggaacctctatcccatagccctttgtttct 500

                                                                       
Query: 301 ccatggtgactagtcattgtgagcaggagacatgagtcaaggggagctagcacaagtgtg 360
           || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ccgtggtgactagtcatcgtgagcaggagacatgagtcagggggagctagcacaagtgtg 560

                                                                       
Query: 361 gaagtatgaagggttcacttgttccttcaacaccaatcaccgagagctatcacacagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagtatgaagggttcacttgttccttcaacaccaatcaccgagagctatcacacagcca 620

                                                                       
Query: 421 tgagtggcctggcctgatgacatcaagagtggggagggcctgagatccccagacctgatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagtggcctggcctgatgacatcaagagtggggagggcctgagatccccagacctgatt 680

                                                
Query: 481 caaaaatcatctgtcaacaagggcacagcttgtgtgc 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaaaatcatctgtcaacaagggcacagcttgtgtgc 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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