BAC Information

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BAC

Clone NameMSMg01-507K12
Chromosome4 (Build37)
Map Location 118,337,161 - 118,337,731
singlet/doubletsinglet
Overlap genenone
Upstream genePrnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290
Downstream geneOlfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507K12.T7 (MSMg01no507_k12.b1)MSMg01-507K12.TJ (MSMg01no507_k12.g1)
ACCAG581753AG581754
length756817
length of high quality
(start - end)
570 (79 - 648)134 (78 - 211)
definitionCHROMAT_FILE: MSMg01no507_k12.b1 PHD_FILE: MSMg01no507_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:16 2005CHROMAT_FILE: MSMg01no507_k12.g1 PHD_FILE: MSMg01no507_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAAATCCG
CGGAATTCAACATTTGTTTCCAACAAACATCAAATGTCGAGGTCAGCTTT
CATTTGGGGGACCATACCCCAACTGGCTTTAGTTGAAGAGCTCAAAAGTC
TTGATGGACATCCCTGAAATTGAGAGACATGGCTGTAAGCTTGACTCCCT
GGACTAGCAGGAAAATAGCTATCTTTGGATAGTTCACGATAAGTCAAAGT
CACATATTTTCATGGACTGGAGGTGAGCGATACAAGGAATAAAGGATAAG
TCAATGACTAACAGATGATGCCCACTTTGTTCCCAAGCAGAGGAGACATA
CTGGCCTACAGAAAAGAGAAATGTGGCCTGGAGAATACCAAGAAAGATAA
AGTGGCTAGAAGGGAAAAATGAATATAAAGGAAATATTATATAAGGGAAA
CTGGCTGCAAACAGAACAAACAAATAAAACAAGTGTTGTTCTGAAACTGG
TCTGAGAAAAAAGGATACATTTCTCCAAAGGGTCAACAATGAGGAAGGCT
GAGGTCTGTCCACAGAAAATAGAAGGTGACTGAGTGACACATCTAATTCG
GGTAAGAGAGGGAGGAGGGAAGGGAAGAGAAGGAATGGAAGAGAGGAAGG
GAGATGAAAGAGATGAANAATCNNNNTANCAANCTANANNTCANTGAAAG
AATCCTTTGNAAGCCAATGTTGTTTTCTCGCAAATGAAAGCAGGCCATTG
GAATAC
NACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCAGAAAAATCATTCTTAGAGAACACACATGAGTGA
TAGAGTGATACATGGTCTGTGTTGTGCCTTCTTTATGTTATGGTGTTTAG
ATTTCTTTCTTTAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTNTNNNNNNNTNTNNNNNNNNNNNNNNNNTNTTNNNNNNGTT
TTTTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
NNNNCNNNNNNNNNNNNNNTTCCCCTCCCCTTNNNNNCCNCCNNNCCNCN
NNCCNNCCCNCCNTTTTTTTTTTCCCCCCCCCCCNTCNTTTCTTTCTTCT
TTTTTTTTTTTTTTTTTCTGGGGGTCCCCCCTTTTTTTTTTTTTTTTTTT
TCCTTTCCTTCTTTTCTGTGCCCTTTCTTCTTTTTTTTCTTGTTTTTTTT
TTCTTCTTCTTTTTCTTCTCCGCCTTTCTCTCTCTTCTTTCCCCTCTTTT
TCTTCTTTTTTCTTCTTCCTTTCTTTTTTTTTGCTCTCTTTCTTTGTCTT
CCTTCTTTCTCTTCTCTTTTCTTTTCTTGTCCTTTTTTTCCTNCTTTTTC
TTTCGTTCTTTTTTTTTTTTTCTTTTTCTTTGTTTGTCCCCCCCTTCTTT
TTTTTTTTTTTTTTTCCCGCCCNCNGCCCGTGCCTCCTTCCCTTTCGTTT
CTTCTTTCCCTCCTTCTCGTCTCGTTTGTGTCTTTTTTGTTTATCTTCGT
GACCGTGTCGTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_k12.b1 MSMg01no507_k12.b1 CHROMAT_FILE:
MSMg01no507_k12.b1 PHD_FILE: MSMg01no507_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:16 2005
         (570 letters)



>mm_chr4_118336961_118337931
          Length = 971

 Score =  996 bits (515), Expect = 0.0
 Identities = 557/571 (97%), Gaps = 1/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaaatgtcgaggtcagctttcatttgggggaccataccccaactggctttagttgaag 60
           ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct: 771 atcaaatgtcgaggtcagccttcatttggggggccataccccaactggctttagttgagg 712

                                                                       
Query: 61  agctcaaaagtcttgatggacatccctgaaattgagagacatggctgtaagcttgactcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 711 agctcaaaagtcttgatggacatccctgaaattgagagacatggctgtaagcctgactcc 652

                                                                       
Query: 121 ctggactagcaggaaaatagctatctttggatagttcacgataagtcaaagtcacatatt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctggaatagcaggaaaatagctatctttggatagttcacgataagtcaaagtcacatatt 592

                                                                       
Query: 181 ttcatggactggaggtgagcgatacaaggaataaaggataagtcaatgactaacagatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 591 ttcatggactggaggtgagcgatacaaggaataaaggataagtcaatgactcacagatga 532

                                                                       
Query: 241 tgcccactttgttcccaagcagaggagacatactggcctacagaaaagagaaatgtggcc 300
           |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgcccacagtgttcccaagcggaggagacatactggcctacagaaaagagaaatgtggcc 472

                                                                       
Query: 301 tggagaataccaagaaagataaagtggctagaagggaaaaatgaatataaaggaaatatt 360
           ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 471 tggagaataccaagaaagataaagtggctggaaggggaaaatgaatataaaggaaatatt 412

                                                                       
Query: 361 atataagggaaactggctgcaaacagaacaaacaaataaaacaagtgttgttctgaaact 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 411 atataagggaaactggctgcaaatagaacaaacaaataaaacaagtgttgttctgaaact 352

                                                                       
Query: 421 ggtctgag-aaaaaaggatacatttctccaaagggtcaacaatgaggaaggctgaggtct 479
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 351 ggtctgagaaaaaaaggatacatttctccaaatggtcaacaatgaggaaggctgaggtct 292

                                                                       
Query: 480 gtccacagaaaatagaaggtgactgagtgacacatctaattcgggtaagagagggaggag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtccacagaaaatagaaggtgactgagtgacacatctaattcgggtaagagagggaggag 232

                                          
Query: 540 ggaagggaagagaaggaatggaagagaggaa 570
           |||||||||||||||||||||||||||||||
Sbjct: 231 ggaagggaagagaaggaatggaagagaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)