BAC Information

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BAC

Clone NameMSMg01-507M13
Chromosome4 (Build37)
Map Location 23,196,322 - 23,196,566
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxl4, Pou3f2, LOC664911, 1700025O08Rik
Downstream geneLOC625462, LOC383998, LOC100040464, LOC623873, LOC664973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507M13.T7 (MSMg01no507_m13.b1)MSMg01-507M13.TJ (MSMg01no507_m13.g1)
ACCAG581851AG581852
length775763
length of high quality
(start - end)
245 (79 - 323)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no507_m13.b1 PHD_FILE: MSMg01no507_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:26 2005CHROMAT_FILE: MSMg01no507_m13.g1 PHD_FILE: MSMg01no507_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCAATXXXXXXXXXXXXXXXXXXXXXXXXAGGAGTTCCAAAATACGCGG
AANNCCTGATCTCCTACTATAAAAAAAATGAAGAAGAGTTGTATTTTTTT
CAGAATTAGATGCTTTTTTATCATCTAATGAGATAGTGATGTTAACTTAT
TTTAAATGTCTCAAAATTGGATAATTTAGACAAAAAATTATATAATATTC
TCATGCATTATACAAGTAAAAGACTCAATTTTTCGTAGAATTTTTGTTAT
TGAGTAATATAGAGAAACAGAGTATCCTGTAGATAAATGAATAATTAAAC
CTATAAAACCTCTGATCAACAAATANTTGCTACAAATACATAATAAAATA
TAAAGGAAGAAAACAACATATTGTCATTTTTGCATCCAGGAATGATAGAA
TTACCTCAAGTGAATTACTTAACTCTAACATTAAGATATGATAAATTAGA
TTGAAAATTTTAGAATTAGTAATACAATGCAACTCAAATTACAAATTTTA
TTAAAGGTGATAAACATAGACCCTGGCACATTTAAGCAAAATATAACAAT
TTTTAAATTGGTGGTTTAAAAATCCCCCTTTTAATTTCCCCTTCCATTGA
CTAAAAACCCCTTTTAAATTTGGCCCCAAAAACCAAAGGGGGGGACATTT
GGGAATAAAGGGGAACAAAGGCCCCTTTTTAGGAAATATGGGGGGGGCCC
CGGGAAAATTTTTTTTTCCCGAAAAAGAAAAAAAAATTCTCCACTCCCCC
CCTCAGAGAAGTCTCTCTCTTTTCT
ACAATGATAGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGAACTCTTCAGCTGGGGAACAGGGT
ACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACG
AAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGT
ACGCCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGT
AAAGTGTGAAATAGCTTTACAAGGTAAGTCTGGCCTTGAACTTTCTAACG
AAATTCAAGACAGTCTATCAGAATTTATGTGTGAAATAGCTTTACAAGGT
ATGTTTGGCCTTGAACTTTTTTTAGTGTTAGGAGCCCTTTTGTTCTTTTT
CACATGTTATCAAGTGATTAACACAGGGCTGAAAATTCTGGATGAAGTTC
AGGGCAGTCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGG
AAATATGGTACGCAAACTAAGTATACAGGCCTTTCCAAGGGTCTTGAACC
TGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGA
AGGAAAAGAAAAAAGAAAAGAAAAAAGATCAATTAGAGAAGCCAGTTCTT
AGTAGTTCTGAATCAGATGAAAAGGCTATTAGGGCCTGGGAAGCGCTCTC
CCGAGACAGTGAAGCCACTTGGACATTTACAAAGATTCGTCCAGGACTCA
GGAGTCCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_m13.b1 MSMg01no507_m13.b1 CHROMAT_FILE:
MSMg01no507_m13.b1 PHD_FILE: MSMg01no507_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:26 2005
         (245 letters)



>mm_chr4_23196122_23196766
          Length = 645

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagaagagttgtatttttttcagaattagatgcttttttatcatctaatgagatagtg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 445 tgaagaagagttgtatttttttcagaattagatgcttttttagcatctaatgagatagtt 386

                                                                       
Query: 61  atgttaacttattttaaatgtctcaaaattggataatttagacaaaaaattatataatat 120
           |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 atgttaacgtatttcaaatgtctcaaaattggaaaatttagacaaaaaattatataatat 326

                                                                       
Query: 121 tctcatgcattatacaagtaaaagactcaatttttcgtagaatttttgttattgagtaat 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 tctcatgcattatacaagtaaaagactcaatttttcatagaatttttgttattgagtaat 266

                                                                       
Query: 181 atagagaaacagagtatcctgtagataaatgaataattaaacctataaaacctctgatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagagaaacagagtatcctgtagataaatgaataattaaacctataaaacctctgatca 206

                
Query: 241 acaaa 245
           |||||
Sbjct: 205 acaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)