NNNNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTTGCATTTGCCCAGTTAGGTCAAAAGCTTTTCTGAC
TTTACCCCATACAGGTGCCCTGTGTCCTTTGCCATTCTATTTTACAGGAT
CTTCCCTTAGTAGAAAGGAATCAGGTCATCTGACATGATGCTTTGTGCTC
TTGCCTGAGATAGCAATAGGCTTGAGCTGACTAGTATACAATTTCAACAA
CTGTTTTTTTCTGTCTTAAAAGCAAACATTTGCCAGGAGATGGTGGCACA
TGCCTTTCATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTT
CGAGGCCCGACTGGTCTTCAAAGTGAGTTCCAGGACAGCCAGGGCTACAC
AGAGAAACTCTGTCTCAAAGGGGGTGGCAGGGTGGGGAAAGCAAACATTG
GTACAAACACTGCCCCATTTGCTGTCAATAATTACTCAACTACAGGTGCT
GCCAATTTAAATTCCATGTATGCAATGCTTTTAAAAATCAAAATGAAGCA
TTGCATTAAAATACCTTGTGTTCCTCTTTCTCTTCAGGATTTCAGGAATG
CATTCCTGAGTGGAAGGGCAGAGATAACATATAAAGATGACTACGTGAGG
CATAGGATTTAAGCTTGAGGTTTCTCTTCTGGGACAGTTGTACAGAACCC
CAAAGTATCACTTGGTGTCAGTTGTAAAATGGGCAATGCTAGGGACTTTG
AAAAGGGTAAG

NNNTTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACT
TTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAA
CGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTA
CATTGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAA
CCTACTTGGTCAGGATGGATGATTGCTTTAATGTGATCTTGGATTCGGTT
AGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTG
GTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGA
GTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTAT
CTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCT
GATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGGG
AGACTATTTATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAG
AAGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAA
ATTTGTCCCATTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTG
TAGAANGATCTGATGGNGTTTTGGATTTCTTCAGCTCTGTTGTATGTCTC
CCTTTCAGTTCTGATTTTGTAATTAA

Query= MSMg01no508_l23.b1 MSMg01no508_l23.b1 CHROMAT_FILE:
MSMg01no508_l23.b1 PHD_FILE: MSMg01no508_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:46 2005
         (644 letters)



>mm_chr4_72033651_72034694
          Length = 1044

 Score = 1029 bits (532), Expect = 0.0
 Identities = 611/650 (94%), Gaps = 23/650 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttgcatttgcccagttaggtcaaaagcttttctgactttaccccatacaggt 64
           |||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 205 gaattcttttgcatgtggccagttaggtcaaaagcgtttctgactttactccatacaggt 264

                                                                       
Query: 65  gccctgtgtcctttgccattctattttacaggatcttcccttagtagaaaggaatcaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccctgtgtcctttgccattctattttacaggatcttcccttagtagaaaggaatcaggt 324

                                                                       
Query: 125 catctgacatgatgctttgtgctcttgcctgagatagcaataggcttgagctgactagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catctgacatgatgctttgtgctcttgcctgagatagcaataggcttgagctgactagta 384

                                                                       
Query: 185 tacaatttcaacaactgtttttttctgtcttaaaagcaaacatttgccaggagatggtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacaatttcaacaactgtttttttctgtcttaaaagcaaacatttgccaggagatggtgg 444

                                                                       
Query: 245 cacatgcctttcatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggc 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 cacatgcctttcatcccagcacttgggaggcagaggcaggcagatttctgagttcgaggc 504

                                                                       
Query: 305 ccgactggtcttcaaagtgagttccaggacagccagggctacacagagaaactctgtctc 364
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 cagcctggtcttcaaagtgagttccaggacagccagggctacacagagaaactctgtctt 564

                                                                       
Query: 365 aaagggggtggcagggtggggaaa----------gcaaacattggtacaaacactgcccc 414
            |||||| |       |    |||          ||||||||||||||||||||||||||
Sbjct: 565 gaaggggat-------t----aaaaaaaaaaaaagcaaacattggtacaaacactgcccc 613

                                                                       
Query: 415 atttgctgtcaataattactcaactacaggtgctgccaatttaaattccatgtatgcaat 474
           |||| | ||||||||| ||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 614 attttccgtcaataataactcaactacaggt--tgccaatttaaattccatgtatgcaat 671

                                                                       
Query: 475 gcttttaaaaatcaaaatgaagcattgcattaaaataccttgtgttcctctttctcttca 534
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 672 gcttttaaaaaacaaaatgaagcaatgcattaaaataccttgtgttcctctttctcttca 731

                                                                       
Query: 535 ggatttcaggaatgcattcctgagtggaagggcagagataacatataaagatgactacgt 594
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggatttcaggaacgcattcctgagtggaagggcagagataacatataaagatgactacgt 791

                                                             
Query: 595 gaggcataggatttaagcttgaggtttctcttctgggacagttgtacaga 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gaggcataggatttaagcttgaggtttctcttctgggacagttgtacaga 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)