Query= MSMg01no509_a23.b1 MSMg01no509_a23.b1 CHROMAT_FILE:
MSMg01no509_a23.b1 PHD_FILE: MSMg01no509_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:11 2005
(336 letters)
>mm_chr4_40878771_40879506
Length = 736
Score = 526 bits (272), Expect = e-154
Identities = 314/328 (95%), Gaps = 1/328 (0%)
Strand = Plus / Minus
Query: 5 gaattctatttagtttcctccagtggctccggtgcctcttaggatgaagaccctaccatc 64
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 704 gaattctatttagaagcctccagtggctccggtgcctcttaggatgaagatcctaccatc 645
Query: 65 cctgccgggcatggtaacttacacttaacaatcctaacaccagaaaggctagtgcaggag 124
||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct: 644 cctgccgagcatggtaacttacactt-acaatcctaacaccaaaaaggctggtgcaggag 586
Query: 125 gattgctttaagttcaagaccagcctgtaccataccatgagaccctgtcttaacacccag 184
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gattgccttaagttcaagagcagcctgtaccataccatgagaccctgtcttaacacccag 526
Query: 185 cacacctttcagaagaaaggataagtgtccctttctttgtcccttctctcaactcatctt 244
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 525 cacacctttcagaagaaaggataagagtccctttctctgtcccttctctcaactcatctt 466
Query: 245 ggcccctcatgtgtcagccactctgatctcccaggtccccagattcatcttattttctac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggcccctcatgtgtcagccactctgatctcccaggtccccagattcatcttattttctac 406
Query: 305 tgctctgtgtgtgtggggggggggggtg 332
| ||||||||||||| ||||||||||||
Sbjct: 405 tactctgtgtgtgtgtggggggggggtg 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_a23.g1 MSMg01no509_a23.g1 CHROMAT_FILE:
MSMg01no509_a23.g1 PHD_FILE: MSMg01no509_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:11 2005
(580 letters)
>mm_chr4_40742075_40743054
Length = 980
Score = 994 bits (514), Expect = 0.0
Identities = 563/580 (97%), Gaps = 3/580 (0%)
Strand = Plus / Plus
Query: 1 actaaccccaaggaaggaggccagggaagtcaccatgggaagagatagagagaagagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 actaaccccaaggaaggaggccagggaagtcaccatgggaagagatagagagaagagggg 263
Query: 61 aaagagaaagaaagaaagagagagagagagagagagagagagagagaaagagagaaagaa 120
||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||| ||||
Sbjct: 264 aaagagaaagaaagaaagaaagaaagaaagagagagagagagagagagagagagagagaa 323
Query: 121 agagagagagagagagagagagagagagagagaaagaaagaaagaaagaaagaaagaaag 180
||||| ||||||| ||| ||| ||||||||||| ||| ||| ||| ||| ||| |||||
Sbjct: 324 agagaaagagagaaagaaagaaagagagagagagagagagagagagagagaga--gaaag 381
Query: 181 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaagaaagaaagaa-gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 440
Query: 241 aaagaaagaaagaaagaaagaaaacatgctcggtgagagacggagagagaggagaccaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaagaaagaaagaaagaaaacatgctcggtgagagacggagagagaggagaccaaa 500
Query: 301 atgtctggattatatagagaagagcctctgggagaagggtatcccagcccctgtgctgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtctggattatatagagaagagcctctgggagaagggtatcccagcccctgtgctgga 560
Query: 361 aagttcagggttaggggcagggtagggactgagggatgctgggagaacctggaggccagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagttcagggttaggggcagggtagggactgagggatgctgggagaacctggaggccagg 620
Query: 421 tctgacttggtaagataaccacctcagtttcgtgttccagaatctaaaaccaaataacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgacttggtaagataaccacctcagtttcgtgttccagaatctaaaaccaaataacta 680
Query: 481 gaagagactccggactggtgtctgggtcagctggcccaacagacatattggtcataaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagagactccggactggtgtctgggtcagctggcccaacagacatattggtcataaggg 740
Query: 541 aggtttctcttgctctcaacatacagcccttctctcattc 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggtttctcttgctctcaacatacagcccttctctcattc 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 276
Number of extensions: 50
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
