Query= MSMg01no509_b09.b1 MSMg01no509_b09.b1 CHROMAT_FILE:
MSMg01no509_b09.b1 PHD_FILE: MSMg01no509_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:13 2005
(662 letters)
>mm_chr4_18426837_18427896
Length = 1060
Score = 1038 bits (537), Expect = 0.0
Identities = 632/665 (95%), Gaps = 9/665 (1%)
Strand = Plus / Plus
Query: 1 caaatgcagacaccattgcatacacttgcaagttattgttgaaaggaccctgatatagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 caaatgcagacaccattgcatacacttgcaagttattgttgaaaggaccctgatatagct 261
Query: 61 gtctcttgtgagactaggatggggcctagcaaacacataagtggatgctcacagtcaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtctcttgtgagactaggatggggcctagcaaacacataagtggatgctcacagtcaact 321
Query: 121 attggatggatcacagggtccccaatggaggagctagagaaagtacccaaggagctaaag 180
||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 322 atttgatggatcacagggtcccc-ttggaggagctagagaaattacccaatgagctaaag 380
Query: 181 ggatctgcaaccctataggtgg-acaacaatatgaaataa-tagtaccctccggagct-t 237
||| |||||||||||||||||| |||||| |||||| ||| |||||| |||||||| |
Sbjct: 381 ggaactgcaaccctataggtggaacaacattatgaactaaccagtacc--ccggagctct 438
Query: 238 gtgtctctatttgcatatgtatcagaagatgatgtagttggccatcagtggaaagagagg 297
|| ||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||
Sbjct: 439 -tgactctagctgcatatgtatcaaaagatgacctagtcggccatcagtggaaagagagg 497
Query: 298 cccattggtcttgcaaactttatatgcctcagtacaggggaaagccagggccaagaagtt 357
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 498 cccattggtcttgcaaactttatatgcctcagtacgggggaaagccagggccaagaagtg 557
Query: 358 ggaatggggttgggagcggagtagggcggacggtttgggggacttatggtgtagcattag 417
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 ggagtggggttgggagcggagtaggggggacggtttgggggacttatggtgtagcattag 617
Query: 418 aaatgtaaatgaagaaaatacctaattaataaaaaatagaaaataaaataaaataaaaat 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 618 aaatgtaaatgaagaaaatacctaattaataaaaaatataaaataaaataaaataaaaat 677
Query: 478 tttcaaaaaaaaagtaaaattcttgggctgaatcaatgtatgttaggataaattctcaga 537
||||||||||||| ||| || || |||||||||||||||||||||||||||| ||||||
Sbjct: 678 tttcaaaaaaaaa--aaagttgtttggctgaatcaatgtatgttaggataaatgctcaga 735
Query: 538 agtccattctgagcttgtgttttccccactttgatttcttttctagttacataaaaaaat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agtccattctgagcttgtgttttccccactttgatttcttttctagttacataaaaaaat 795
Query: 598 gttctttccaatttttccttctattgaaatggtttctttttttcacacaatataacctga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gttctttccaatttttccttctattgaaatggtttctttttttcacacaatataacctga 855
Query: 658 ttata 662
|||||
Sbjct: 856 ttata 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space: 684600
Effective search space used: 684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_b09.g1 MSMg01no509_b09.g1 CHROMAT_FILE:
MSMg01no509_b09.g1 PHD_FILE: MSMg01no509_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:13 2005
(639 letters)
>mm_chr4_18576042_18577077
Length = 1036
Score = 1170 bits (605), Expect = 0.0
Identities = 630/639 (98%), Gaps = 3/639 (0%)
Strand = Plus / Minus
Query: 1 tttaggtcaagtgtcatttttaccttttggaactgaaatacttcagaatttgattttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 836 tttaggtcaagtgtcatttttaccttttggaactgaaatacttcagaatttga--ttttt 779
Query: 61 tttttttgaaaaaataggagactgtggtccaaaatttagaaagtactgtggaacatttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tttttttgaaaaaataggagactgtggtccaaaatttagaaagtactgtggaacatttac 719
Query: 121 acagatactgttacttaattaatccatttgcacatctattgccaatattaaaaagaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acagatactgttacttaattaatccatttgcacatctattgccaatattaaaaagaatga 659
Query: 181 tagaaaaatatattaaaaaatcatataactggggcacttcttactacaacttataggtct 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tagaaaaatatatt-aaaaatcatataactggggcacttcttactacaacttataggtct 600
Query: 241 atgttttgaatcctttgtgatttgatggtaataaactaagaatggcaaactttcataaca 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 599 atgttctgaatcctttgtgatttgatggtaataaactaagaatggcaaactttcataaaa 540
Query: 301 tatccactaaagttaaaaacaaattatcttctagtaatcatgtctctatccctatagggt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tatccactaaagttaaaaacaaattatcttctagtaatcatgtctctatccctatagggc 480
Query: 361 caggatggccaccagatggcactcagatttcaaatgacaattcaacgtagacagttcagt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 479 caggatggccaccagatggcactcagatttcaaatgacaattcaacttagacagttcagt 420
Query: 421 actcagaactctttattgtctcttaaactttgtaacaggaggatttctttgtttttattt 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 actccgaactctttattgtctcttaaactttgtaacaggaggatttctttgtttttattt 360
Query: 481 cacttctctaaatactttgaagttcaacaagacaaacttgaatttactgtacaacacaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cacttctctaaatactttgaagttcaacaagacaaacttgaatttactgtacaacacaat 300
Query: 541 taacagtcacagactcaatataggtttaataatatgtacatgttggttttactgtgataa 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 299 taacagtcacagactcaatataggtttaataatttgtacatgttggttttactgtgataa 240
Query: 601 aaacaagcatttttcttttaatttccactctatacctag 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaacaagcatttttcttttaatttccactctatacctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1036
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1026
Effective search space: 645354
Effective search space used: 645354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
