CCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTGTTTCTCTAGCCTCCATGCACCTCCAACAATCAGAATTCTA
TCTTGCACTAGCAGGAAATATCCTGAGGCAACACTATAGCACTGTCAAAG
TCAACCCTAAGAGAGACAGTCTAAATTTAAATTGATTATCTTAAGCTTTG
CACATTTTATATGAGATAATTACTGTACATGAGAAACTTATTTTGAAAAT
GTGGAGCAGATATTTTTAAATCCTTCATAGCAAGAATATCTAAAGGTTCT
TCATACTATAATTATGCACAGTTTATGAAACAAAGGAACAGATCCAACAG
CGCATTACTGAAGACTGTTTAATACAGGCTGACATTGTTTTATTTTTCTT
CCTTCCTACCCAGTACTTTCCAGAAGCGTTTCAACTGCTCATTTCTTTTG
GAGCCATTTTTTAAAAAATAATCTCTCAAAAATTCAAAGTATCCTGCTAC
CAAGTCGTCAAAAAATTTTAATACAGTGACCAGAAAATTAAACCCTTTAG
GTCCTGTGCAGTAGGCTTGACCTCCACCAAGTGCAGATTAAAAATATTCT
GATAAACACTATACCTACCATACTAAACACCTACAGACTTTTGCTGTTAC
TGCAGCTTTAAATAACAGCTATTTATATAGCATTATATTATATCAGCTGA
TAGAAGTGATCTAGAATTTACAATAAAATCATGAGACAATTCATGCAGGG
TACATACAAATACTACCCCCATTTTAC

AATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGATGTCTATGGTCAGTACTGCTGC
TGGTTGTTATGGGCAAGAATGCTTTTGTTGTAATAGTGTTCATGACTCCA
GACTCAGAATTAAGAATGGAAGATACTGAAGACTTCTTTGACACCACACA
CACATACACACTAAAAGAAATAGTCTAGACAGGAAGCCATGGAAGGGTCC
TTAAAATTGTGATAAAGATGATGAAATACAGCACTTCATAGTGATGGCTT
GTGGTGCAGGGATGGATATTATGTACTCATTTATCGTTAAGAGGACAGCT
ATATGGGCAACACATATTGGACTGGATAAACAAACACACATACACATACA
CACACACACACACACACACACACATTTGTCAGGAAGGTCACAAGCTAGGG
AAGGTGGACCTGGAAGGAAAGGAAATGAGTATGATTGAGATACATTGTAT
GGAATTTTAAAATGATCAATAAAAAGATATGTCTTAGCTTCTGTTATATT
GCTGTAAAGAGACACTGTGTTTATGCCAACTCTTGAAAAGGAAAATATTT
AGTTTAAGCTGGCTTACGGTTTCCAAGGTTTAGTCCACATGGCAGCATAT
TTGTTGATATTGTGCTTGGAGGAGTTGAGAAATTTACCATCTTTATATAT
AATACGCTTCCCGTGTGTGCTCCGTTTTGTTTGCACACATTCCTTTCACC
TTACTATATTNATACATATTG

Query= MSMg01no509_e18.b1 MSMg01no509_e18.b1 CHROMAT_FILE:
MSMg01no509_e18.b1 PHD_FILE: MSMg01no509_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:29 2005
         (648 letters)



>mm_chr4_19832597_19833644
          Length = 1048

 Score = 1230 bits (636), Expect = 0.0
 Identities = 645/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagcctccatgcacctccaacaatcagaattctatcttgcactagcaggaaatatcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 707 ctagcctccatgcacctccaacaatcagaattctatcttgcactagcaggaaatatcttg 648

                                                                       
Query: 61  aggcaacactatagcactgtcaaagtcaaccctaagagagacagtctaaatttaaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aggcaacactatagcactgtcaaagtcaaccctaagagagacagtctaaatttaaattga 588

                                                                       
Query: 121 ttatcttaagctttgcacattttatatgagataattactgtacatgagaaacttattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttatcttaagctttgcacattttatatgagataattactgtacatgagaaacttattttg 528

                                                                       
Query: 181 aaaatgtggagcagatatttttaaatccttcatagcaagaatatctaaaggttcttcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaaatgtggagcagatatttttaaatccttcatagcaagaatatctaaaggttcttcata 468

                                                                       
Query: 241 ctataattatgcacagtttatgaaacaaaggaacagatccaacagcgcattactgaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctataattatgcacagtttatgaaacaaaggaacagatccaacagcgcattactgaagac 408

                                                                       
Query: 301 tgtttaatacaggctgacattgttttatttttcttccttcctacccagtactttccagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgtttaatacaggctgacattgttttatttttcttccttcctacccagtactttccagaa 348

                                                                       
Query: 361 gcgtttcaactgctcatttcttttggagccattttttaaaaaataatctctcaaaaattc 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 347 gcgtttcaactgctcatttcttttggagccatttttaaaaaaataatctctcaaaaattc 288

                                                                       
Query: 421 aaagtatcctgctaccaagtcgtcaaaaaattttaatacagtgaccagaaaattaaaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaagtatcctgctaccaagtcgtcaaaaaattttaatacagtgaccagaaaattaaaccc 228

                                                                       
Query: 481 tttaggtcctgtgcagtaggcttgacctccaccaagtgcagattaaaaatattctgataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tttaggtcctgtgcagtaggcttgacctccaccaagtgcagattaaaaatattctgataa 168

                                                                       
Query: 541 acactatacctaccatactaaacacctacagacttttgctgttactgcagctttaaataa 600
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 167 acactatacctaccatactaaacatctacagacttttgctgttactgcagctttaaataa 108

                                                           
Query: 601 cagctatttatatagcattatattatatcagctgatagaagtgatcta 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 cagctatttatatagcattatattatatcagctgatagaagtgatcta 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)