Query= MSMg01no509_h18.b1 MSMg01no509_h18.b1 CHROMAT_FILE:
MSMg01no509_h18.b1 PHD_FILE: MSMg01no509_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:44 2005
(697 letters)
>mm_chr4_7084093_7085189
Length = 1097
Score = 1208 bits (625), Expect = 0.0
Identities = 655/665 (98%), Gaps = 3/665 (0%)
Strand = Plus / Plus
Query: 1 cagacagaattcacttatattatttagtgcactcattaccccattccaacacttatgcca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 200 cagacagaattcacttatattatttagtgcactcattacccaattccaacacttatgcca 259
Query: 61 ctgtggactctttgcaattg-tttttttttttctctttattatagtttcttttctttttt 119
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 260 ctgtggactctttgcaattgttttttttttttctctttattacagtttcttttctttttt 319
Query: 120 ctttttttctcttttgggttttatgagacagggtttctctgtgtagccctggctgtcctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttttttctcttttgggttttatgagacagggtttctctgtgtagccctggctgtcctg 379
Query: 180 gagctcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 gagctcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgccttcc 439
Query: 240 aagtgctgggattaaaggcgtgcgccaccactgtccggcttctattttcctgcttgtttg 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagtgctgggattaaaggcgtgtgccaccactgtccggcttctattttcctgcttgtttg 499
Query: 300 caattgtgacagtttttttgttggggataatggatagtgtgaattttaaattttgtggca 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 caattgtgacagtttttttgttggggataatggacagtgtgaattttaaattttgtggca 559
Query: 360 ttgaaaatttagtcttttttatgagcgttgtttggttagttctcagccatgttataattc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgaaaatttagtcttttttatgagcgttgtttggttagttctcagccatgttataattc 619
Query: 420 ttggacatatggctacttactactgaatgatggggatttttttttctaaagtgagtgcat 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 ttggacatatggctacttactactgaacgatggggatttttttttctaaagtgagtgcat 679
Query: 480 cattaggtgcttactatgtgattgtcatatgaacacacactcaaaaggatgaattatcag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cattaggtgcttactatgtgattgtcatatgaacacacactcaaaaggatgaattatcag 739
Query: 540 gcaatataatcttatgggctgacatatatatatggcacataaacacacatatatatgtaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcaatataatcttatgggctgacatatatatatggcacataaacacacatatatatgtaa 799
Query: 600 atgtatctctatc-atctatctttctatctatctatctatctatctatctatctatctat 658
||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 800 atgtatctctatctatc-atctatctatctatctatctatctatctatctatctatctat 858
Query: 659 ctatc 663
|||||
Sbjct: 859 ctatc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_h18.g1 MSMg01no509_h18.g1 CHROMAT_FILE:
MSMg01no509_h18.g1 PHD_FILE: MSMg01no509_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:44 2005
(639 letters)
>mm_chr4_7274582_7275616
Length = 1035
Score = 1154 bits (597), Expect = 0.0
Identities = 627/639 (98%), Gaps = 4/639 (0%)
Strand = Plus / Minus
Query: 1 tttggcaaatactcagggttgggagaagaaaaataaccactttacatggaagcacatgac 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tttggcaaatactcaggattgggagaagaaaaataaccactttacatggaagcacatgac 776
Query: 61 acagaggcagagtctccagcagttagttaaatgagggaaggctggcaagattatttgaga 120
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 775 acagaggcagagtctccagc----agttaagtgagggaaggctggcaagattatttgaga 720
Query: 121 gcaagattgtgttttccaagattagcaatgagtttaacaatgaacttctatcaatgctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gcaagattgtgttttccaagattagcaatgagtttaacaatgaacttctatcaatgctca 660
Query: 181 aagagaagattgtaaactgcctactttgcaaagattcgtttgtcagcactagttgcagcg 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 659 aagagaagattgtaaactgcctactttgcaaaggttcgtttgtcagcactagttgcagcg 600
Query: 241 ttgtgcttacattgatgtaaaaccaaagcagtcaccctacaatttagggaatgccaacag 300
| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcgtgctaacaatgatgtaaaaccaaagcagtcaccctacaatttagggaatgccaacag 540
Query: 301 cagccctgcacatcaacaacagggtacaggctctgctaatcaaattcctctctttgtttc 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 539 cagccctgcacatcaacaacagggtacagtctctgctaatcaaattcctctctttgtttc 480
Query: 361 atcatgaacacatatctaaatttagtgaatgagccaaagactggaacttccaactttgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atcatgaacacatatctaaatttagtgaatgagccaaagactggaacttccaactttgtc 420
Query: 421 aaaatgtgatggcaattaagtgacacctcatctttgaagaaatgcatttttcaagtcctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaaatgtgatggcaattaagtgacacctcatctttgaagaaatgcatttttcaagtcctt 360
Query: 481 gacagtaaaaaactatttagattatttacaacatttccaatgagttagtaacctttttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gacagtaaaaaactatttagattatttacaacatttccaatgagttagtaacctttttta 300
Query: 541 ttacattacattttgcataatataatttgtcactatttctttattaagcttgttttatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttacattacattttgcataatataatttgtcactatttctttattaagcttgttttatat 240
Query: 601 tcataggggtcccacaacactatattttttctctttgtc 639
||||||||||||||||||||||||||||| |||||||||
Sbjct: 239 tcataggggtcccacaacactatatttttcctctttgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1035
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1025
Effective search space: 644725
Effective search space used: 644725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
