BAC Information

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BAC

Clone NameMSMg01-509M05
Chromosome4 (Build37)
Map Location 104,206,305 - 104,206,966
singlet/doubletsinglet
Overlap geneDab1
Upstream geneLOC665451, LOC100039940, EG665460, LOC622315
Downstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509M05.T7 (MSMg01no509_m05.b1)MSMg01-509M05.TJ (MSMg01no509_m05.g1)
ACCAG583362AG583363
length746754
length of high quality
(start - end)
664 (83 - 746)327 (328 - 654)
definitionCHROMAT_FILE: MSMg01no509_m05.b1 PHD_FILE: MSMg01no509_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:06 2005CHROMAT_FILE: MSMg01no509_m05.g1 PHD_FILE: MSMg01no509_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGACGATGC
GCGGAATTCCCTTGCCTGCGACACACACCACCAAGACAGCATGTGTTCTG
TTTGGAGAAAGGGAAGGTAAATAGACCCTCTAGGAGAAAGGCCATTCAAG
AAAAACAGCAGATGTGACTTCTGATTTCAGTAGCCTCCATTCTGATATCA
GATGTCAATCAGGTCTTGGTCTCTATAGCTCTGCCTTAGCTGTTGGCTCA
CTGGCTGGGTGTTTCATTGGTCTTGGACTTGTCATTTCTCCACAGTGTTA
TTGTAGCATCCCTACATGATAATACTTCATAGAGTAACTGAGGATGAAGT
ATGCTTCTGGGCTCTGGGTTCTCTCTATATGCTCAATGGCCATGGTCATA
CATGCCTTCTCAGACAATGTGATGTCCAGACTGGCTAATACTTGAGGCTC
ATATAACATAAAAGCTCTATAAGAAACTAAAGTCTAGGGGACTGGTGAGC
CAAAGGACAGTAAATCTATGATTTCTACTATAATAACACAGGTATGGCAC
AGTCAAAAGCAATGGCCATTTGTTCTTACACAGATAACATGCAATGGTTT
CTTTACAGACTTCAAGGATAGCCCAAATTCATTACTTCAGCCAACCTTTA
TTAGTAAATATTTACTATACAGTTGCTACCCGCAGGACACTGTGCTAAGC
AAGAAGCATGCAGGAAGAACAAGATAGGTGATCACGGACATCCTTA
NCGCTATGAAGTGGGAGGCCGGGCGGCCGCCTGGTCAACATATGTTAGGT
GACCTATAGAAGTACTACAAAAAGCTTTTCCTGGCATTTCTTGTTATTTC
ATCATTATCTCTGGTGGCGTGGACTTCTTAGGCGTGAGTGCCACCTTGGC
TCGTGTTCCCATATTCTTTGTTTTGTGAGTTCTGCACCTCTTGGGGTGGA
TGTGTGTTTTAGTTTAATTTTTTTTCTTTTCCCCACTCTTTGGTTTATTT
ATTTAATGTGGAGCCTCTTCATGATCTCTCCCATGGCCTCCGATCCTAGC
TATTTATTAGACTGCATTTAGTGANTGAAGTGACAGGAGCTGTAGTTTGA
CACCACACCTTGTAAAAATGCAGTGGGAAGGAATGGGTACTTCCAGATCA
CTAAAGCCAGCTGACGCGATGGCTCATGCCCATCATCCCAGAAGTCAGAT
GGCAGATGCAGGAAGACTGCTACTAGTTTGAGGCTGACCTGGGCTACATA
GGAAATTGTGGGCCAGCATGGCTATAAAATAAAATACCCTGTCTGCAAAC
AAACCAACAGGAAATGCAGACCAAAAGACTAGTGAAGCACAAATCTGTAA
GAGATCAAAAGGTGAGACAATGGGGAGAGGAGGCAAGGGAAAGCAGAGAG
GAATTATGGATGGAAGGAAAGAAATAGAGAAGCAACAGGGAACCCTCACT
AATACCACCAAGCACAGCAAAATCTAAATAAGTCCTATTATAAAAGCAGA
AATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_m05.b1 MSMg01no509_m05.b1 CHROMAT_FILE:
MSMg01no509_m05.b1 PHD_FILE: MSMg01no509_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:06 2005
         (664 letters)



>mm_chr4_104206205_104207268
          Length = 1064

 Score = 1180 bits (610), Expect = 0.0
 Identities = 649/662 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacagcatgtgttctgtttggagaaagggaaggtaaatagaccctctaggagaaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aagacagcatgtgttctgtttggagaaagggaaggtaaatagaccctctaggagaaaggc 703

                                                                       
Query: 61  cattcaagaaaaacagcagatgtgacttctgatttcagtagcctccattctgatatcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cattcaagaaaaacagcagatgtgacttctgatttcagtagcctccattctgatatcaga 643

                                                                       
Query: 121 tgtcaatcaggtcttggtctctatagctctgccttagctgttggctcactggctgggtgt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 642 tgtcaatcaggtcttggtctctatagctctgccttagctgctggctcactggctgggtgt 583

                                                                       
Query: 181 ttcattggtcttggacttgtcatttctccacagtgttattgtagcatccctacatgataa 240
           || |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 582 tttattggtcttggacttgccatttctccacagtgttattgtaacatccctacatgataa 523

                                                                       
Query: 241 tacttcatagagtaactgaggatgaagtatgcttctgggctctgggttctctctatatgc 300
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cacttcacagagtaactgaggatgaagtatgcttctgggctctgggttctctctatatgc 463

                                                                       
Query: 301 tcaatggccatggtcatacatgccttctcagacaatgtgatgtccagactggctaatact 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcaatggccatggtcgtacatgccttctcagacaatgtgatgtccagactggctaatact 403

                                                                       
Query: 361 tgaggctcatataacataaaagctctataagaaactaaagtctaggggactggtgagcca 420
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 402 tgaggttcatataacataaaagctctataagaaactaacgtctaggggactggtgagcca 343

                                                                       
Query: 421 aaggacagtaaatctatgatttctactataataacacaggtatggcacagtcaaaagcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 342 aaggacagtaaatctatgatttctactataataacacaggtatggcacagtcaaaggcaa 283

                                                                       
Query: 481 tggccatttgttcttacacagataacatgcaatggtttctttacagacttcaaggatagc 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 282 tggccatttgttcttacacagataatatgcaatggtttctttacagacttcaaggatagc 223

                                                                       
Query: 541 ccaaattcattacttcagccaacctttattagtaaatatttactatacagttgctacccg 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 ccaaattcattacttcagccaagctttattagtaaatatttactatacagttgctacccg 163

                                                                       
Query: 601 caggacactgtgctaagcaagaagcatgcaggaagaacaagataggtgatcacggacatc 660
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 162 caggacactgtgctaagcaagaagcatgcaggaagaacaagacaggtgatcacggacatc 103

             
Query: 661 ct 662
           ||
Sbjct: 102 ct 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)