BAC Information

Click to search

BAC

Clone NameMSMg01-510C10
Chromosome4 (Build37)
Map Location 39,771,822 - 39,915,538
singlet/doubletdoublet
Overlap geneLOC621880
Upstream geneLOC100039487, 1700009N14Rik, LOC435775, LOC329824
Downstream geneLOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510C10.T7 (MSMg01no510_c10.b1)MSMg01-510C10.TJ (MSMg01no510_c10.g1)
ACCAG583655AG583656
length729734
length of high quality
(start - end)
653 (77 - 729)124 (131 - 254)
definitionCHROMAT_FILE: MSMg01no510_c10.b1 PHD_FILE: MSMg01no510_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:39 2005CHROMAT_FILE: MSMg01no510_c10.g1 PHD_FILE: MSMg01no510_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,914,886 - 39,915,538)(39,771,822 - 39,771,945)
sequence
CCCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGATCATCCG
CGGAATTCATAATCTAACCATAATAGGCAATTAATAATTTAAGAGACAAG
TCTAACACACCCTTTGCCTTTGATGTCAACTAGAGTTTAACATATTAATT
GCCCCAACCTGAGGTGAAATAATGCAAATTTAATCCTGAAGCTGTTCTTC
CCTGTTTGCTTTAACTGACAAGTCTTTTATGCTTTTCTAGTATGAGAATT
TTCTCTTTAAAATATTGATGATCGTGCCAAATATGTGTAGATCCTTTTTT
TTAAAAGAACCTCTCATTTTTTAAAGCAATTAAAAGTTAGACTATATCCC
ATTAAAATTCAGGACTAAAACTTGTCATTAAATGGAAATAATCTGTGTGC
TGCATACCAAAGGAGGAGAGCTTGATGATGCTGGCCCAGCTAAAGCTGAG
TGAGAAGGCATCAGGACTGACACAGCAGTTATGCTGGAATTCTAAAAAGC
CAGGGTGAGCTTCATTTGCATGTATGAAAAATAGAATGCGGTTTCAAATT
TTTTTAAAGAATATTTTGAAATTTAGTTTGAGCCAATGCATGCGGAAAAT
GGAAAAGTGCTTGGGACTTAGAATAGAGGATAATAGAGAACATGTAACAA
AAAGAGATGATCAGGCCATATGTCCCTTGAAATAATGTCTCCATTCTATT
CAGGGATGGATGCTGCCTTGCTGAAGGTA
CCGACGATGATAGTGNGTAGGCCGGGNGGNCGCCTGGGTACAAAACGGGG
GGNNGAACTANAGAAGTACCTAAGAGAGGGGGAAGAACAGANTTAAATAT
AATCATAGAACTCAAGAAGGACTTAAATGCAAATATGTCCTAAGAAATAC
AAAGACCTGAATGAAAAAGTAAGGCAATTTAGGATATAAAAATAGAATTT
CACACAAAAAAATAGAAATATTGAGAAAAAATCCAACTGATACTGGAAAT
AAAACATACAAGGTCAAATATAAAGTTCATTGGAAAGGCTTACCAGTAAA
ATAGAAAACATCAACAACAGAATTTTTTTTCCTGAACACAAGATAAATTA
TAAAGAACATGTGCCAAAGATCAGATTTGGCACCAGAGGGTAAACTGAGG
CAGGCAGCCCATGAGGGGTCAGTGTTGAGAGTATATGATTCAAGTGGATC
CAGATGCCTACAGGGGCTACAGCAGTTTGAGATGGATAAGGGGGAAATCA
GACACTCACACACTCAGAGTGGTTGCAGCAAGGACAAGCTCCTGAGATTT
ATTTCTTCTCTTAACCCACTTTTATACCCCTTGAAACAAAAGTTTCTTTG
TTTGTTTTAAATTAGGAAGAAAATTACCTCATAGCCACAAGTTACACATT
TCCCAGAAATAATCACCATAAAAACAATCTTCCAAAACAGATCAAATTCT
CGACCCAAAAGAAAATTACAACCGGATATTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_c10.b1 MSMg01no510_c10.b1 CHROMAT_FILE:
MSMg01no510_c10.b1 PHD_FILE: MSMg01no510_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:39 2005
         (653 letters)



>mm_chr4_39914686_39915738
          Length = 1053

 Score = 1255 bits (649), Expect = 0.0
 Identities = 652/653 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaattaataatttaagagacaagtctaacacaccctttgcctttgatgtcaactagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gcaattaataatttaagagacaagtctaacacaccctttgcctttgatgtcaactagagt 794

                                                                       
Query: 61  ttaacatattaattgccccaacctgaggtgaaataatgcaaatttaatcctgaagctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttaacatattaattgccccaacctgaggtgaaataatgcaaatttaatcctgaagctgtt 734

                                                                       
Query: 121 cttccctgtttgctttaactgacaagtcttttatgcttttctagtatgagaattttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cttccctgtttgctttaactgacaagtcttttatgcttttctagtatgagaattttctct 674

                                                                       
Query: 181 ttaaaatattgatgatcgtgccaaatatgtgtagatccttttttttaaaagaacctctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttaaaatattgatgatcgtgccaaatatgtgtagatccttttttttaaaagaacctctca 614

                                                                       
Query: 241 ttttttaaagcaattaaaagttagactatatcccattaaaattcaggactaaaacttgtc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tttttcaaagcaattaaaagttagactatatcccattaaaattcaggactaaaacttgtc 554

                                                                       
Query: 301 attaaatggaaataatctgtgtgctgcataccaaaggaggagagcttgatgatgctggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attaaatggaaataatctgtgtgctgcataccaaaggaggagagcttgatgatgctggcc 494

                                                                       
Query: 361 cagctaaagctgagtgagaaggcatcaggactgacacagcagttatgctggaattctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagctaaagctgagtgagaaggcatcaggactgacacagcagttatgctggaattctaaa 434

                                                                       
Query: 421 aagccagggtgagcttcatttgcatgtatgaaaaatagaatgcggtttcaaattttttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aagccagggtgagcttcatttgcatgtatgaaaaatagaatgcggtttcaaattttttta 374

                                                                       
Query: 481 aagaatattttgaaatttagtttgagccaatgcatgcggaaaatggaaaagtgcttggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aagaatattttgaaatttagtttgagccaatgcatgcggaaaatggaaaagtgcttggga 314

                                                                       
Query: 541 cttagaatagaggataatagagaacatgtaacaaaaagagatgatcaggccatatgtccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cttagaatagaggataatagagaacatgtaacaaaaagagatgatcaggccatatgtccc 254

                                                                
Query: 601 ttgaaataatgtctccattctattcagggatggatgctgccttgctgaaggta 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttgaaataatgtctccattctattcagggatggatgctgccttgctgaaggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no510_c10.g1 MSMg01no510_c10.g1 CHROMAT_FILE:
MSMg01no510_c10.g1 PHD_FILE: MSMg01no510_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:39 2005
         (124 letters)



>mm_chr4_39771622_39772145
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatatgtcctaagaaatacaaagacctgaatgaaaaagtaaggcaatttaggatataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatatgtcctaagaaatacaaagacctgaatgaaaaagtaaggcaatttaggatataaa 260

                                                                       
Query: 61  aatagaatttcacacaaaaaaatagaaatattgagaaaaaatccaactgatactggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagaatttcacacaaaaaaatagaaatattgagaaaaaatccaactgatactggaaat 320

               
Query: 121 aaaa 124
           ||||
Sbjct: 321 aaaa 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)