BAC Information

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BAC

Clone NameMSMg01-510G17
Chromosome4 (Build37)
Map Location 52,136,540 - 52,136,859
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666681, LOC100040814, LOC384015
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510G17.T7 (MSMg01no510_g17.b1)MSMg01-510G17.TJ (MSMg01no510_g17.g1)
ACCAG583860AG583861
length751751
length of high quality
(start - end)
670 (74 - 743)426 (326 - 751)
definitionCHROMAT_FILE: MSMg01no510_g17.b1 PHD_FILE: MSMg01no510_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:00 2005CHROMAT_FILE: MSMg01no510_g17.g1 PHD_FILE: MSMg01no510_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGATGCACTACCGAATGGCAGAGAAGCACCTGAAAAAAT
GCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAACTGGATATAGTACTACCGGTATATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAAC
CTAAGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAA
GAAAAATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGAAGTGGGA
N
ACGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCAGTAATACGTTAGAAAGCTAAAATATTCTTGCTT
ATATATGTACTTAATTATTGTCTCAACCATAATAATCTTAATTAGTAAAA
ATTATTCATCAGATTAGTCCCTGGTGATTTAATATTTTTCATTATTAATA
TTTTAGTAAGGGATAGTAAATCTAAGTTTGATTATTTGACCTGAATGTTT
TCTCATGGCACATTTTTAAAGGTTCAGGGTTATCGGTGAGGGCTTGAGGG
ATGGTACAGTAAGATTATCTTATTGTTCTCTCTTCTCTCAGAAAGAAAAT
CATTATAATTTCAATTATTTTTACTTGATTTAATTACCTTCCTTGAGTAT
AAATAATGATCTGAAAATAAGACTAGCAAATAGAAATCATATCATATTAA
ATGAACTTGGGATCAGGACAGAAGTTCCAACAATTTCTGAAAAAGCCTCA
ATATCCTTCTTCTATTTTGTACTGTGCTTATAGGAAGCAACTTTCAGCAT
TGCTGATTAGAAAAAAAAATCAGCTGAAAAGTCATGAAGGTACTCTAAAG
CCAATGGTGACAAACATTTAGCCAATATATAATTTTCTTTTTCTTACGAA
GATTTATACAGAGATTACATAGAAACTTTAATTGGGCATTAATTTTTAGT
TGAATGAAATAAAGCTTTCCCAAAGTTAGTACTTTAAGATAAAAAAAAAA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_g17.g1 MSMg01no510_g17.g1 CHROMAT_FILE:
MSMg01no510_g17.g1 PHD_FILE: MSMg01no510_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:00 2005
         (426 letters)



>mm_chr4_52136540_52137365
          Length = 826

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%), Gaps = 1/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctctcttctctcagaaagaaaatcattataatttcaattatttttacttgatttaatta 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctctcttctctcagaaagaaaatcattataatttcaattatttttacttgatttaatta 261

                                                                       
Query: 62  ccttccttgagtataaataatgatctgaaaataagactagcaaatagaaatcatatcata 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccttccttgagtataaataatgatctgaaaataagactagcaaatagaaatcatatcata 201

                                                                       
Query: 122 ttaaatgaacttgggatcaggacagaagttccaacaatttctgaaaaagcctcaatatcc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttaaatgaacttgggatcaggacagaagttccaacaatttctgaaaaagcctcaatatcc 141

                                                                       
Query: 182 ttcttctattttgtactgtgcttataggaagcaactttcagcattgctgattag-aaaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 140 ttcttctattttgtactgtgcttataggaagcaactttcagcattgctgattagaaaaaa 81

                                                                       
Query: 241 aaaatcagctgaaaagtcatgaaggtactctaaagccaatggtgacaaacatttagccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  aaaatcagctgaaaagtcatgaaggtactctaaagccaatggtgacaaacatttagccaa 21

                               
Query: 301 tatataattttctttttctt 320
           ||||||||||||||||||||
Sbjct: 20  tatataattttctttttctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)