Query= MSMg01no511_a20.b1 MSMg01no511_a20.b1 CHROMAT_FILE:
MSMg01no511_a20.b1 PHD_FILE: MSMg01no511_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:48 2005
(674 letters)
>mm_chr4_104359426_104360499
Length = 1074
Score = 1201 bits (621), Expect = 0.0
Identities = 660/673 (98%), Gaps = 4/673 (0%)
Strand = Plus / Plus
Query: 4 gaattcaacatgtctgcccaggttcttactcagggatggaatagctggctcgtccatgtg 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaacatgtcagttcaggttcttactcagggatggaatagctggctcgtccatgtg 263
Query: 64 tggcaagcaatcttttttttttttagtatcccccacactgctgtatggaagatttaccca 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggcaagcaatcttttttttttt-agtatcccccacactgctgtatggaagatttaccca 322
Query: 124 gcgggtattcaaagtcgg-ccttctagttatgacatactctatctgctcctgaggagcat 182
|| ||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaggtattcaaag-cggaccttctggttatgacatactctatctgctcctgaggagcat 381
Query: 183 ccagcctgctggaaagacagtcccactgtcaggacattataaatccactgctgcttggtc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccagcctgctggaaagacagtcccactgtcaggacattataaatccactgctgcttggtc 441
Query: 243 tctgccgaggagagcaaagccgtggcagtctgggggaggagcagttaatgagtgcttcca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctgccgaggagagcaaagccgtggcagtctgggggaggagcagttaatgagtgcttcca 501
Query: 303 atctggaatgtttcagtgcagagcccttgattgacacattagagaagtattcaacactat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atctggaatgtttcagtgcagagcccttgattgacacattagagaagtattcaacactat 561
Query: 363 taatatcacaaaatgtgttcatatacatatgtatatgattatgtgtgacaaaggagatca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taatatcacaaaatgtgttcatatacatatgtatatgattatgtgtgacaaaggagatca 621
Query: 423 tcggcccgccatatttcagtattgtggggcttcatcgttcttgctcgtctgatatcctgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcggcccgccatatttcagtattgtggggcttcatcgttcttgctcgtctgatatcctgt 681
Query: 483 ttctcgttttgcttcttagcataacctgagtgagatacattgtcggtcaggcaacaaagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttctcgttttgcttcttagcataacctgagtgagatacattgtcggtcaggcaacaaagc 741
Query: 543 cagtggggatggatgaccagctcagggtgttgcaggcagcaagtagccccaggag-ccag 601
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 742 cagtggggatggatgacccgctcagggtgttgcaggcagcaagtagccccaggaggccag 801
Query: 602 atgcatgatcaggggaaagaagtgagaggagatctggagggctgtcagcttagtcaggaa 661
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 802 atgcatgagcaggggaaagaagtgaggggagatctggagggctgtcagcttagtcgggaa 861
Query: 662 ctcctggatcctg 674
|||||||||||||
Sbjct: 862 ctcctggatcctg 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_a20.g1 MSMg01no511_a20.g1 CHROMAT_FILE:
MSMg01no511_a20.g1 PHD_FILE: MSMg01no511_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:48 2005
(509 letters)
>mm_chr4_104500872_104501780
Length = 909
Score = 907 bits (469), Expect = 0.0
Identities = 506/535 (94%), Gaps = 26/535 (4%)
Strand = Plus / Minus
Query: 1 actctggcttctgcctctgaatcctttccatctacttttatttatcaccactgaagcatt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 772 actctggcttctgcctctgaatcctttccatctacttttacttatcaccactgaagcatt 713
Query: 61 atttttttttaaaaattaaaacaattaaatatgctcaatcttcctcaactagttatgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atttttttttaaaaattaaaacaattaaatatgctcaatcttcctcaactagttatgcac 653
Query: 121 tagaaattggcagtgcttccatggaaacagcagaagtcctttacgtggtgctgagtgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tagaaattggcagtgcttccatggaaacagcagaagtcctttacgtggtgctgagtgggc 593
Query: 181 tactcagagcatctcttcctccaggcgtttgcttccagctccagaggtgtgcagaaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tactcagagcatctcttcctccaggcgtttgcttccagctccagaggtgtgcagaaactg 533
Query: 241 atattcctagtgtctcagaggacttccgctgatacatgcctggggtggggggagagaaca 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 532 atattcctagtgtctcagaggacttccactgatacatgcctggggtggggggagagaaca 473
Query: 301 accccttcttttccacaaaggagaaactgaggccagtgggattgtggcctttttgcagag 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 accccttcttttccacaaatgagaaactgaggccagtgggattgtggcctttttgcagag 413
Query: 361 ttctcaggtgtcaatggttgggacttgaagttgtaagtttccttccagtcccttcccacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttctcaggtgtcaatggttgggacttgaagttgtaagtttccttccagtcccttcccacg 353
Query: 421 ggaccacaacatttgttcactgaatgtctttcatttatcagccatttcttctgggg---- 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggaccacaacatttgttcactgaatgtctttcatttatcagccatttcttctggggaaaa 293
Query: 477 ----------------------aaaagaacagtgacaaagatgaccagagataca 509
|||||||||||||||||||||||||||||||||
Sbjct: 292 acaatgactgaacttctgattaaaaagaacagtgacaaagatgaccagagataca 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
