BAC Information

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BAC

Clone NameMSMg01-511I24
Chromosome4 (Build37)
Map Location 30,085,875 - 30,086,059
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040811
Downstream geneLOC665185, LOC619906, LOC100040864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I24.T7 (MSMg01no511_i24.b1)MSMg01-511I24.TJ (MSMg01no511_i24.g1)
ACCAG584729AG584730
length743753
length of high quality
(start - end)
188 (45 - 232)539 (74 - 612)
definitionCHROMAT_FILE: MSMg01no511_i24.b1 PHD_FILE: MSMg01no511_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:28 2005CHROMAT_FILE: MSMg01no511_i24.g1 PHD_FILE: MSMg01no511_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATACCATTTCATAGAAATTATTGAGGGGTTGCTGAAAAGGAAAAA
AAAATAGTTGCTTTGAAAAGGTTTAATCTCCTAGGTTTTTAAATTTGAAA
ACAAAATAAACTATTTGGCAGCCTTCACAAATTCAGTTTTAGTGCTGCTA
TAGAGGAGTCTGTCAATGGTACCTGATGAAATGNNGCATGNNAGGTGGCC
TACTGGANNAACAACCGTTGGGGGGTGAATGCCCAAGGCCTCTCAATAGG
AGCGGTGAACTTTTGTGGTTTCCCAAAAAAAAAAAATTGGGATTTGCCTC
TGGGGAGAAAAGGTTTTTTCCCCCAAAAAACCCCAAAATTTCGGGGGGAA
AAAAAAAAAAAAGAGATCCCCGCGGGGGGGGGGAAAAAAAGATTTTTTTG
TGTTTCCCCCCCCCCCCCCCTCTTTCTTTTNNNNTTGGGTGGGTGGGGGT
TATCCCCATNACCAACTTTTTTTCTCCCCCCCCCTTTTTCTCCNNNNNNN
CCCNCCNNNNNAAGTATTTATNCCNCNTCTTNNCCCCCCCTNNCCCCAGC
TTTTTNNNNNNNNNNNNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGCATATCGNNNNNAACNCGGGAAACGGNNNNANNNA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGGNNNNNNA
NATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGACAGGACCTCAAAAAGGGCAGGAA
CCTGGAAGTAAGAGTTGATGCAGAGGCCAAAGACGGGTGCTTCTTGCTGA
CTTGCTCAGCCAGCTTTCTTATAATGTTCAGGACCTTCTCTAGCTCCTCC
ATTGTGGGCCCTGTGTTCCATCCTATAGATGGATGTGAGCATCTACTTCT
GTATTTGCCAGGCACTGGCATAGCCTCACAAGACACAGCTATATCAGGGT
CCCTTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTGGGTTTGGTGG
AACAACAATATGAACTAAACAGTACCCGCAGAGCTTGTGTCTCTAGCTGC
ATATGTAGCAGAAGATAGCCTAGTCAGCCATCATTAGGAAGAGGCTCCTA
GGTCTTGCAAACTTTATATACCCCAGTACAGGTGAACGCCAGGGCCAAGC
AGTCAGAGTGGGTGGGTAGGGGAGCAGGGTGTGAGAGGGTATAGGGAACT
TTCANGAAAGCATTTGAACTGTAAATAAAGAAAATATCTAATAGAATAAA
ATAATAATAATAATGTTCAGGACCACCAGCCCACGGATAGCACCCTACAC
AAAGGGCATAGCTAGCTTCCTGTCAGTCATTAATTCCCAATATATTCTAG
AGCTAAGCTCTTTCTAGACATTTTCTCAATAAGGCTCCCCCTTTTCAAAA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i24.b1 MSMg01no511_i24.b1 CHROMAT_FILE:
MSMg01no511_i24.b1 PHD_FILE: MSMg01no511_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:28 2005
         (188 letters)



>mm_chr4_30085671_30086259
          Length = 589

 Score =  331 bits (171), Expect = 2e-95
 Identities = 182/187 (97%), Gaps = 5/187 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataccat--ttcatagaaattattgaggggttgctgaaaagg-aaaaaaaaat 61
           ||||||||||||||  |  |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattctataccatagt--atagaaattattgaggggttgctgaaaaggaaaaaaaaaat 262

                                                                       
Query: 62  agttgctttgaaaaggtttaatctcctaggtttttaaatttgaaaacaaaataaactatt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agttgctttgaaaaggtttaatctcctaggtttttaaatttgaaaacaaaataaactatt 322

                                                                       
Query: 122 tggcagccttcacaaattcagttttagtgctgctatagaggagtctgtcaatggtacctg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggcagccttcacaaattcagttttagtgctgctatagaggagtctgtcaatggtacctg 382

                  
Query: 182 atgaaat 188
           |||||||
Sbjct: 383 atgaaat 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 589
Length adjustment: 8
Effective length of query: 180
Effective length of database: 581
Effective search space:   104580
Effective search space used:   104580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)