BAC Information

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BAC

Clone NameMSMg01-511N20
Chromosome4 (Build37)
Map Location 90,147,762 - 90,148,379
singlet/doubletsinglet
Overlap genenone
Upstream geneDmrta1, Zfp352, LOC619842, LOC435792
Downstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511N20.T7 (MSMg01no511_n20.b1)MSMg01-511N20.TJ (MSMg01no511_n20.g1)
ACCAG584959AG584960
length753765
length of high quality
(start - end)
682 (43 - 724)620 (73 - 692)
definitionCHROMAT_FILE: MSMg01no511_n20.b1 PHD_FILE: MSMg01no511_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:50 2005CHROMAT_FILE: MSMg01no511_n20.g1 PHD_FILE: MSMg01no511_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGCTATCTTCTTCCACATAACATGAAAAAAAATCTAGAAATGAGTG
AATTTCTAAAGTCATATGACGGATGAAAAGGTTAATCTGACCAGTGCCAT
ACAAGGAAGTTGAAACAATAATTAAAAATTCCCCTAAAAGTAAAAGCTTA
AAAATAGATGAAATCACTGCTAAATTACACAGGGATAAAAGAAATCGGAC
ACCAATACTTTAAACTTTTCCCACCAAATAGGAAAGAAGGAATACTATTA
AATTCATTTGGTGAAGCCAGTTGACCAGACACCCAAACTGGAAAATCTCA
AAACAATATTTTCCTTATGAAACACGGATAAAAATTGTCAACAAATACTG
ACAAGTGGAATTCAAAGCACATAAACAAATCATATAGGACTGAAGAGATA
CCTAAGCAGCTGAGAGTACCTTCTCTTCCAGGCGGCCTGGGTTAGATTCC
CAGCCAGGTTTTAATGTCAGTTTTAGGAAGTCCTTTTCTGGACTTTGTGG
ATACTTTATGCATGTGATATACAGATATATATGGAGGCAAAATTACAAAA
ACATGTAAAATAAAACTTCAAAAAGGTTACTCTATTATGACCAATTGCTT
TCATCCTAAATGTAGGAGCTGGTCCACTGTAAAATAGTCAAAAATATAAT
TCATCATATAAATAAGCTTAGTGATAGAGACCACATGACAGTTTCAGTAG
ATG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGAGTTGATGAATGGCCCTCTCTCAAT
GAATAAAGTGACTCACTTTTGCAAATACAGCAACAACAAGCTGCAAGCAA
ACATACATCCCTGTCACAGGATATAGAATCCTATAGAGGATATATGTCTC
AATGTCTCAACATACTATTATAAATTAGGACTTTCTATTATTCTTAAATT
TAAAGTGTGTGCGTTTTTATATGTGAATACTGTATAACATTATTTCCAGC
CTTCCCTTTCTGGCTGTCAACACCATCCCTATATCTCCCCTATCTACCTC
CTATCTATCTAAAATTCACAACTTCTATAATTACTGACCAGAACGTGGAA
AAACCTATGCCTTACATAATTGTTAAATATTATTTTGAATTTAATATACA
GGGTTTTGTATTGGCTTGGAGGCAATGACTAATGCATCCCAGGCTGTTCA
TATATATATATATAAAGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTG
GCTGTCCTGGAACTCACTCTGTAGACCAGGCTCACCTCCAACTCAGAAAT
CCACCTGCCTCTCCTCCCAAGAGCTGTGATTAAAGGTATGCACCACCACA
GCCCAGCTACAGTATATATTTTTATAAGCATTTTCATGCTTATAGATGGA
TTAGTGCATGAATGTGCATGCAAATGTATATATACATCTGTGTTTGGGAG
CCAGAAACTGATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_n20.g1 MSMg01no511_n20.g1 CHROMAT_FILE:
MSMg01no511_n20.g1 PHD_FILE: MSMg01no511_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:50 2005
         (620 letters)



>mm_chr4_90147562_90148581
          Length = 1020

 Score = 1133 bits (586), Expect = 0.0
 Identities = 611/620 (98%), Gaps = 2/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagttgatgaatggccctctctcaatgaataaagtgactcacttttgcaaatacagca 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tagagttgatgaatggccctctctcaatgaataaagtgactcgcttttgcaaatacagca 260

                                                                       
Query: 61  acaacaagctgcaagcaaacatacatccctgtcacaggatatagaatcctatagaggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacaagctgcaagcaaacatacatccctgtcacaggatatagaatcctatagaggata 320

                                                                       
Query: 121 tatgtctcaatgtctcaacatactattataaattaggactttctattattcttaaattta 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgtctcaatgtctcaaaatactattataaattaggactttctattattcttaaattta 380

                                                                       
Query: 181 aagtgtgtgcgtttttatatgtgaatactgtataacattatttccagccttccctttctg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgtgtgagtttttatatgtgaatactgtataacattatttccagccttccctttctg 440

                                                                       
Query: 241 gctgtcaacaccatccctatatctcccctatctacctcctatctatctaaaattcacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtcaacaccatccctatatctcccctatctacctcctatctatctaaaattcacaac 500

                                                                       
Query: 301 ttctataattactgaccagaacgtggaaaaacctatgccttacataattgttaaatatta 360
           |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ttctataattactgaccacaatgtggaaaaacctatgtcttacataattgttaaatatta 560

                                                                       
Query: 361 ttttgaatttaatatacagggttttgtattggcttggaggcaatgactaatgcatcccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgaatttaatatacagggttttgtattggcttggaggcaatgactaatgcatcccag 620

                                                                       
Query: 421 gctgttcatatatatatatataaagtttttcaagacagggtttctctgtgtagccctggc 480
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgttcatatatatatata--aagtttttcaagacagggtttctctgtgtagccctggc 678

                                                                       
Query: 481 tgtcctggaactcactctgtagaccaggctcacctccaactcagaaatccacctgcctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtcctggaactcactctgtagaccaggctcacctccaactcagaaatccacctgcctct 738

                                                                       
Query: 541 cctcccaagagctgtgattaaaggtatgcaccaccacagcccagctacagtatatatttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cctcccaagagctgtgattaaaggtatgcaccaccacagcccagctacagtatatatttt 798

                               
Query: 601 tataagcattttcatgctta 620
           ||||||||||||| ||||||
Sbjct: 799 tataagcattttcgtgctta 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)