BAC Information

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BAC

Clone NameMSMg01-512C15
Chromosome4 (Build37)
Map Location 115,688,487 - 115,855,650
singlet/doubletdoublet
Overlap geneFaah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik
Upstream geneStil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1
Downstream geneLOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512C15.T7 (MSMg01no512_c15.b1)MSMg01-512C15.TJ (MSMg01no512_c15.g1)
ACCAG585188AG585189
length755783
length of high quality
(start - end)		680 (33 - 712)323 (64 - 386)
definitionCHROMAT_FILE: MSMg01no512_c15.b1 PHD_FILE: MSMg01no512_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:13 2005CHROMAT_FILE: MSMg01no512_c15.g1 PHD_FILE: MSMg01no512_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,688,487 - 115,689,162)(115,855,336 - 115,855,650)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGTCCTG
CCTGGTCTACAGAGCAAGTTCTAGAGCAACCAAGGCTAAACAGAGAAACC
ATGTCTCGAGGAAAGACAAAAGAAAGAAAGAATGAAAGAGACAAACAAAC
AAAGAGAAAGAGCAAATTCGTCAGTTCTTTAAGAGACTGAAGGGCAATTA
TTTTAGACAAAATCGGGGAGGTGCAATGCAGGAAGACCCAGCCTTCTCCC
AGCCGCCCAGCCAAATGGATTCCTTATGGCTAGAAGTCATCCTTCCCGTA
GGCAGGAACTGTGGGCAGACTCCCGTGCCTGCTCACCCAAGCTGTGCTGA
AAGCTGGCTGCACAGAAGGACATGGAGGAGCAGCCAAGGCTCCCCAGGCC
TAGCCCAGAATCAGCATGAGGATCCTGAGATGGTACCACCAAGGAATAAC
CAAAGAACCTGTGCTAGCTAAGGTAGAGGTGGCAGGTATGGGATCCGAGC
CTCCCAAACTAGGAGGTGCCAGCTCCAAACACTGCCTGGGTAGGCTGGAA
CCAAGGGACTTTTATTTCAATAGAGACATAAGATGCATGCTGGACTTAGT
GAGGAGTAATTTAGAGTATTACAGCCAGCCAAAGTTTTGCCGGCATTCGG
GGCACAGCTGGGTAACCAGAGACCAGTCAGTCCTCCTAATAGCCCTCCAC
TGCCTTGAACTAGCGTTCCACAACACACTTGGTTTTACTTCTTGCTCAAA
ACTCA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTATCTCAGGTCCCAACGCCCTTAGGTCAGGGCTGGC
AGGGAGACGCACTTCCAGCCAGGCGCTGGCGCCTGTGCGCCTCCTTCACG
GGAAGAATGCCTTTACTAAATCCGGAACGGATTTGCATCACTGCAGCAAG
GGAAGGGCTCAAGGATCTCACAAAGCTCCAAAGCTGAGTTGAGGGTGCGG
GCGTCCATCCCACCCTAGCCCCAGAACTGTCTAGGCTGCCGAAAGGCAGT
GAGACATGCACCCTGGGATTGGGGAAGGAGAGAGGTGATGAGATGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANANANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTNANNNNNNNTNNNNNNNNNANNNNNNNNNNNNNNAAANNNANNNAN
NAAANAATAAAAAAAAAAAAAAAAATTATTTTTAATAATTTAATTATTAA
ATTTTTTAATTATAATTATTTATAATTATATTTAATAATTTTTTTTTTTA
TTTTTTTTTNNNATTTTTTTTTTTTTTTTTTTTATATNAATATATATTTA
ATTAATAATTTTATATAATAAAATATATATATATTAATTTTTAGTTATTA
TTAATATTTTGAATTTGTTAATTAAGTATAANG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_c15.b1 MSMg01no512_c15.b1 CHROMAT_FILE:
MSMg01no512_c15.b1 PHD_FILE: MSMg01no512_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:13 2005
         (680 letters)



>mm_chr4_115688283_115689362
          Length = 1080

 Score = 1276 bits (660), Expect = 0.0
 Identities = 672/676 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtcctgcctggtctacagagcaagttctagagcaaccaaggctaaacagaga 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtccagcctggtctacagagcaagttctagagcaaccaaggctaaacagaga 264

                                                                       
Query: 65  aaccatgtctcgaggaaagacaaaagaaagaaagaatgaaagagacaaacaaacaaagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaccatgtctcgaggaaagacaaaagaaagaaagaatgaaagagacaaacaaacaaagag 324

                                                                       
Query: 125 aaagagcaaattcgtcagttctttaagagactgaagggcaattattttagacaaaatcgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagagcaaattcgtcagttctttaagagactgaagggcaattattttagacaaaatcgg 384

                                                                       
Query: 185 ggaggtgcaatgcaggaagacccagccttctcccagccgcccagccaaatggattcctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaggtgcaatgcaggaagacccagccttctcccagccgcccagccaaatggattcctta 444

                                                                       
Query: 245 tggctagaagtcatccttcccgtaggcaggaactgtgggcagactcccgtgcctgctcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 tggctagaagtcatccttcccgtaggcaggaactgtgggcagactcccgcgcctgctcac 504

                                                                       
Query: 305 ccaagctgtgctgaaagctggctgcacagaaggacatggaggagcagccaaggctcccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaagctgtgctgaaagctggctgcacagaaggacatggaggagcagccaaggctcccca 564

                                                                       
Query: 365 ggcctagcccagaatcagcatgaggatcctgagatggtaccaccaaggaataaccaaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcctagcccagaatcagcatgaggatcctgagatggtaccaccaaggaataaccaaaga 624

                                                                       
Query: 425 acctgtgctagctaaggtagaggtggcaggtatgggatccgagcctcccaaactaggagg 484
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acctgtgctcgctcaggtagaggtggcaggtatgggatccgagcctcccaaactaggagg 684

                                                                       
Query: 485 tgccagctccaaacactgcctgggtaggctggaaccaagggacttttatttcaatagaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgccagctccaaacactgcctgggtaggctggaaccaagggacttttatttcaatagaga 744

                                                                       
Query: 545 cataagatgcatgctggacttagtgaggagtaatttagagtattacagccagccaaagtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cataagatgcatgctggacttagtgaggagtaatttagagtattacagccagccaaagtt 804

                                                                       
Query: 605 ttgccggcattcggggcacagctgggtaaccagagaccagtcagtcctcctaatagccct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttgccggcattcggggcacagctgggtaaccagagaccagtcagtcctcctaatagccct 864

                           
Query: 665 ccactgccttgaacta 680
           ||||||||||||||||
Sbjct: 865 ccactgccttgaacta 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_c15.g1 MSMg01no512_c15.g1 CHROMAT_FILE:
MSMg01no512_c15.g1 PHD_FILE: MSMg01no512_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:13 2005
         (323 letters)



>mm_chr4_115855170_115855892
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatctcaggtcccaacgcccttaggtcagggctggcagggagacgcacttccagccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctatctcaggtcccaacgcccttaggtcagggctggcagggagacgcacttccagccagg 422

                                                                       
Query: 61  cgctggcgcctgtgcgcctccttcacgggaagaatgcctttactaaatccggaacggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgctggcgcctgtgcgcctccttcacgggaagaatgcctttactaaatccggaacggatt 362

                                                                       
Query: 121 tgcatcactgcagcaagggaagggctcaaggatctcacaaagctccaaagctgagttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcatcactgcagcaagggaagggctcaaggatctcacaaagctccaaagctgagttgag 302

                                                                       
Query: 181 ggtgcgggcgtccatcccaccctagccccagaactgtctaggctgccgaaaggcagtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtgcgggcgtccatcccaccctagccccagaactgtctaggctgccgaaaggcagtgag 242

                                                                       
Query: 241 acatgcaccctgggattggggaaggagagaggtgatgagatgagagagagagagagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acatgcaccctgggattggggaaggagagaggtgatgagatgagagagagagagagagag 182

                          
Query: 301 agagagagagagaga 315
           |||||||||||||||
Sbjct: 181 agagagagagagaga 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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