BAC Information

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BAC

Clone NameMSMg01-512E16
Chromosome4 (Build37)
Map Location 47,505,813 - 47,678,646
singlet/doubletdoublet
Overlap genenone
Upstream geneNans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512E16.T7 (MSMg01no512_e16.b1)MSMg01-512E16.TJ (MSMg01no512_e16.g1)
ACCAG585286AG585287
length766782
length of high quality
(start - end)		225 (35 - 259)537 (67 - 603)
definitionCHROMAT_FILE: MSMg01no512_e16.b1 PHD_FILE: MSMg01no512_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:24 2005CHROMAT_FILE: MSMg01no512_e16.g1 PHD_FILE: MSMg01no512_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,505,813 - 47,505,975)(47,678,110 - 47,678,646)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTCA
TCCTGCGTGCGTGTTTATATAATGCTGACTTCCTTACATTAGTTAGCGAT
GCATACATTTTATTTTATGATAATGCTAGATTTTGTTTTTAAAAATTGTA
TATATATATGTATTGTATATAATATATGTATGTATGTATATATATATATA
TGTGTATATATATATATATATGCATATATATATATTATACAATATATATA
TATATATACTTTTTTAAAAAACAATATCTCGTTTTCTCAAAAAAAAAAGT
GTGTGTCTCTCTCACATGTGTGAGGGAGTGCGCTTTATATACACACGCGC
GCAGTATAAAGAGAATTGCGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCCTACTGTGTAAAAAANNN
CCCCACAGTGAAAAAACCNNGAAATGTTTTGTGTGTCTGGTATGACCCAG
AATGACCAGATTTTATGCCGCCTGTTTTGTTTCTTTCTCGATACCACCAC
ACACATTCTTTCCCCTTTTCACTTACACTCCCTTGCAATTAAACTGCCCG
CCACAAGTCTTTGTCTGACACCCCCCCCTTCTATCCCACACCGCCTTATA
TTTTCTTTCACCACTAACTCGCTCCCTAACTTCCTTCCCCCACCATTCCT
TTTAACTTCGATCCTTTTCTTCCTTTTTCTTAACCCTTCTCTATCCCCCT
TTTCTCCTTACCCCTC

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCCTCGGACATTTCTTTTCTGTAAAGGTCAGTG
GACTCTTGTATGCCCAACCTTCGCAGGTAGGATCTGCCTGTTTTCAAGGC
AATCATTTTTGTGTTTGTATGTAAGCAACTCGGATGATAATGATCCCTTG
GATTAGTTTAAATGTGCCTATTCCTCCTCTGTGACTAATTAAGGCTGAAT
TCCGTGCATCCAGGAAGCTGGTTGGCATTTGCCAGTATCTGTGCAGACCT
GCTGAGTTTGATTACCCACTATTAGTTCACAGCAGTTGGACAGAGCAGCC
GACTTCCAGGATCGTCTCAATTATCAAGGTACCTTGTCACCTTTTCTGGC
CAAGTTTTAACATCTTCACATCATCCCCATAGCTGGTGAATGTTTTAAGC
TTGGCCCCCTCTAGGGGATTAGTAAAGACACTGGGTGCCTCCTCTTTGGG
TGGCTAATGAAGGCTCTAGCAATGACAATAATACAGATTACTTTAAAATA
GTTCCTATTTTTGTCAGGGCTAAAAATATCTTTCATTTATATTTTCTTTC
AGACTAATGTCCCTGTCCAAAGTGAAGAACTGAAAAAAGAAGATTCTGAA
TATCAACGCTATTAGACTAACAGCACAACATTTATGAGGATGGGTTACAA
ATGTGTCTATGAATTATAAATAATGTATACTAAGGCTGTAGATATAGGAA
CACTATAAAAATACTGCTTTTTTTCTCAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_e16.b1 MSMg01no512_e16.b1 CHROMAT_FILE:
MSMg01no512_e16.b1 PHD_FILE: MSMg01no512_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:24 2005
         (225 letters)



>mm_chr4_47505609_47506233
          Length = 625

 Score =  300 bits (155), Expect = 5e-86
 Identities = 161/163 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttcatcctgcgtgcgtgtttatataatgctgacttccttacattagttagcg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattctcttcatcctgcgtgcgtgtttatataatgctgacttccttacattagttagtg 264

                                                                       
Query: 65  atgcatacattttattttatgataatgctagattttgtttttaaaaattgtatatatata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcatacattttattttatgataatgctagattttgtttttaaaaattgtatatatata 324

                                                      
Query: 125 tgtattgtatataatatatgtatgtatgtatatatatatatat 167
           ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 tgtattgtatataatatatgtatgtatgtatgtatatatatat 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no512_e16.g1 MSMg01no512_e16.g1 CHROMAT_FILE:
MSMg01no512_e16.g1 PHD_FILE: MSMg01no512_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:24 2005
         (537 letters)



>mm_chr4_47677910_47678846
          Length = 937

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctcggacatttcttttctgtaaaggtcagtggactcttgtatgcccaaccttcgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctcctcggacatttcttttctgtaaaggtcagtggactcttgtatgcccaaccttcgcag 678

                                                                       
Query: 61  gtaggatctgcctgttttcaaggcaatcatttttgtgtttgtatgtaagcaactcggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtaggatctgcctgttttcaaggcaatcatttttgtgtttgtatgtaagcaactcggatg 618

                                                                       
Query: 121 ataatgatcccttggattagtttaaatgtgcctattcctcctctgtgactaattaaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ataatgatcccttggattagtttaaatgtgcctattcctcctctgtgactaattaaggct 558

                                                                       
Query: 181 gaattccgtgcatccaggaagctggttggcatttgccagtatctgtgcagacctgctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaattccgtgcatccaggaagctggttggcatttgccagtatctgtgcagacctgctgag 498

                                                                       
Query: 241 tttgattacccactattagttcacagcagttggacagagcagccgacttccaggatcgtc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 497 tttgattacccactattagttcacagcagttggacagagcagctgacttccaggatcgtc 438

                                                                       
Query: 301 tcaattatcaaggtaccttgtcaccttttctggccaagttttaacatcttcacatcatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcaattatcaaggtaccttgtcaccttttctggccaagttttaacatcttcacatcatcc 378

                                                                       
Query: 361 ccatagctggtgaatgttttaagcttggccccctctaggggattagtaaagacactgggt 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccatagctggtgaatgttttaggcttggccccctctaggggattagtaaagacactgggt 318

                                                                       
Query: 421 gcctcctctttgggtggctaatgaaggctctagcaatgacaataatacagattactttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcctcctctttgggtggctaatgaaggctctagcaatgacaataatacagattactttaa 258

                                                                    
Query: 481 aatagttcctatttttgtcagggctaaaaatatctttcatttatattttctttcaga 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatagttcctatttttgtcagggctaaaaatatctttcatttatattttctttcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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