ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGAGCTATTCATGCAGTGGGTAAGGAATGCCAGGGGTATTCTTTTCT
AGTTTTTAATGACCAGGGTATATTATAATTCAGTTCTGAGATTGAGAACA
AGGACAAATAAAGAGAATCTTTGTGTTTTGATTCCCTCTTTTCCAGCATC
ATGTAGCTCTATGTGGTGTGATGCCACTGCCACATCCCAACTACACGTCA
TTTATCAGATTTAAGCATTCTAGAGAAACTTCTACTATTTTTTTCTTTCT
TCTTGTGGGACCTTGTCTTGGAATGGAGGCAAAACCCACACCTCTACCCA
ACCATCCTACTCCTCACAGAGGTCTCAGCCAACAAAGTGTGAGTAGTGTC
CAGCCTTCAGTGCATAAGCAATGAGGCAACAGAAGAATGAAATGTGAAGA
AAGAAGAGACTGTAGAAAGTTCTTGAGTGTCAAAGAGTTATTTAAGAACA
CAGGACTTTAGATAGTTAATAATCTTTGGACTGTCTTATTATGTCTGGTA
ATATTCCTTTTAAAACTGAGATAGTGTCTTTTGTCTGTGGTTCTAGCACC
TGGAATGCTTAGGCCAAATGATAATGTTGAGTTAGAATAAGACTGACCTG
AGTAGTGAACTCTGGGCCAGCTTAGTTACAGAAGGCACTATGTTTATAGC
AGACTTATTTGTAATAGCTAGAAGCTGGAN

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATGGCCCTTCTGTCCTGTGCCTTCTGACATG
GCAGATCACCAGCATGTCTGATCCACTGAAGACACCACAGCCTGAAGGCC
TCACAGGAGTTCTGCTGCAGACAGGGCAACAGACCCATTAGTCTGAAAGT
GTCTCTGGAGTTCAGATGCACACGGGACAGCAGGTTCTGTAGTCTGAAGG
CCTCCCTACAGAACAGCTACATGCAGGTCAACAGCTTGTCTGCTCCTCTG
AAGACCCAACAGTCTGATGCCCTCCAAAAAGAGCAATTGCAGCCAGGGCA
ATAGGTCACTGGAATATGCAACCCTCGGAAGACCTCACAGTCTGAAAGTC
TCACAGGAAGTCTGCTACAGTCAGGGCCACAGGCCTCCCAGGAGACCTGC
AATAACCTGGGACATAGGAAGCAGGCTCCAGACAGAGACACCAAGACCAG
CGAACACCAGGGATAACCAGAAAGCTAGAGCCAAGTGCAAGACCATAAGC
AACAGAAGCCAATGTACTTTGACATCATGAGAACCCAGTTCTCACACAAA
AGAAAGCCTTGGATACTCCAACTCACCTGAAAATCAGGAAGCTGACCTAA
AATTCTATCTCATGAATATAATAGAATCCTTAAAGGAGGATATAAATAAC
ATACTGAAAGAAATAAAGAAAATACAGGTN

Query= MSMg01no512_f01.b1 MSMg01no512_f01.b1 CHROMAT_FILE:
MSMg01no512_f01.b1 PHD_FILE: MSMg01no512_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:25 2005
         (688 letters)



>mm_chr4_78288947_78290034
          Length = 1088

 Score = 1245 bits (644), Expect = 0.0
 Identities = 674/684 (98%), Gaps = 2/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgagctattcatgcagtgggtaaggaatgccaggggtattcttttctagtttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagctattcatgcagtgggtaaggaatgccaggggtattcttttctagtttt 264

                                                                       
Query: 65  taatgaccagggtatattataattcagttctgagattgagaacaaggacaaataaagaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatgaccagggtatattataattcagttctgagattgagaacaaggacaaataaagaga 324

                                                                       
Query: 125 atctttgtgttttgattccctcttttccagcatcatgtagctctatgtggtgtgatgcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctttgtgttttgattccctcttttccagcatcatgtagctctatgtggtgtgatgcca 384

                                                                       
Query: 185 ctgccacatcccaactacacgtcatttatcagatttaagcattctagagaaacttcta-c 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 385 ctgccacatcccaactacacgtcatttatcagatttaagcattctagagaaacttctatg 444

                                                                       
Query: 244 tatttttttctttcttcttgtgggaccttgtcttggaatggaggcaaaacccacacctct 303
           | |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 445 t-tttttttcttacttcttgtgggaccttgtcttggaatgaaagcaaaacccacacctct 503

                                                                       
Query: 304 acccaaccatcctactcctcacagaggtctcagccaacaaagtgtgagtagtgtccagcc 363
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 acccaaccatcctactcctcacagagatctcagccaacaaagtgtgagtagtgtccagcc 563

                                                                       
Query: 364 ttcagtgcataagcaatgaggcaacagaagaatgaaatgtgaagaaagaagagactgtag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcagtgcataagcaatgaggcaacagaagaatgaaatgtgaagaaagaagagactgtag 623

                                                                       
Query: 424 aaagttcttgagtgtcaaagagttatttaagaacacaggactttagatagttaataatct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaagttcttgagtgtcaaagagttatttaagaacacaggactttagatagttaataatct 683

                                                                       
Query: 484 ttggactgtcttattatgtctggtaatattccttttaaaactgagatagtgtcttttgtc 543
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttggacagtcttattatgtctggtaatattccttttaaaactgagatagtgtcttttgtc 743

                                                                       
Query: 544 tgtggttctagcacctggaatgcttaggccaaatgataatgttgagttagaataagactg 603
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 744 tgtggttctagcacctggaatgcttaggacaaatgataatgttgagttagaataagactg 803

                                                                       
Query: 604 acctgagtagtgaactctgggccagcttagttacagaaggcactatgtttatagcagact 663
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 804 acctgagtagtgaactctgggccaggttagttacagaaggcactatgtttatagcagact 863

                                   
Query: 664 tatttgtaatagctagaagctgga 687
           ||||||||||||||||||||||||
Sbjct: 864 tatttgtaatagctagaagctgga 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)